Strain Fitness in Pantoea sp. MT58 around IAI47_08655

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,827,076	+		IAI47_08650	0.40	-0.6
1,827,076	+		IAI47_08650	0.40	+0.9
1,827,077	-		IAI47_08650	0.40	+0.9
1,827,117	+		IAI47_08650	0.43	+0.0
1,827,118	-		IAI47_08650	0.43	+1.7
1,827,118	-		IAI47_08650	0.43	+1.2
1,827,190	+		IAI47_08650	0.48	+1.1
1,827,190	+		IAI47_08650	0.48	+0.8
1,827,190	+		IAI47_08650	0.48	-2.0
1,827,245	+		IAI47_08650	0.52	-0.7
1,827,344	+		IAI47_08650	0.58	-1.5
1,827,345	-		IAI47_08650	0.59	+0.6
1,827,345	-		IAI47_08650	0.59	+0.1
1,827,381	+		IAI47_08650	0.61	-1.1
1,827,407	-		IAI47_08650	0.63	-1.8
1,827,544	+		IAI47_08650	0.72	+2.2
1,827,544	+		IAI47_08650	0.72	-0.6
1,827,544	+		IAI47_08650	0.72	-1.6
1,827,545	-		IAI47_08650	0.72	-0.2
1,827,545	-		IAI47_08650	0.72	+0.9
1,827,545	-		IAI47_08650	0.72	-0.4
1,827,546	+		IAI47_08650	0.72	+0.0
1,827,546	+		IAI47_08650	0.72	-0.7
1,827,546	+		IAI47_08650	0.72	+2.9
1,827,546	+		IAI47_08650	0.72	-2.6
1,827,547	-		IAI47_08650	0.72	-1.6
1,827,609	+		IAI47_08650	0.76	+0.8
1,827,609	+		IAI47_08650	0.76	-2.6
1,827,609	+		IAI47_08650	0.76	-2.0
1,827,610	-		IAI47_08650	0.77	-1.8
1,827,610	-		IAI47_08650	0.77	-1.2
1,827,610	-		IAI47_08650	0.77	+0.2
1,827,612	+		IAI47_08650	0.77	+0.0
1,827,612	+		IAI47_08650	0.77	-1.6
1,827,663	+		IAI47_08650	0.80	+1.6
1,827,664	-		IAI47_08650	0.80	+1.3
1,827,724	+		IAI47_08650	0.84	-1.2
1,827,725	-		IAI47_08650	0.84	+1.3
1,827,912	+				+1.6
1,827,912	+				+1.0
1,827,912	+				+0.4
1,827,912	+				-1.8
1,827,913	-				+1.6
1,827,913	-				+0.2
1,827,927	+				+0.4
1,827,928	-				-2.4
1,827,928	-				-0.7
1,827,928	-				-0.8
1,827,928	-				-0.7
1,827,928	-				+2.8
1,827,928	-				-0.5
1,827,943	+				+1.2
1,828,082	-		IAI47_08655	0.19	+2.4
1,828,082	-		IAI47_08655	0.19	+1.6
1,828,082	-		IAI47_08655	0.19	+1.5
1,828,082	-		IAI47_08655	0.19	-2.8
1,828,082	-		IAI47_08655	0.19	+0.6
1,828,082	-		IAI47_08655	0.19	-1.2
1,828,082	-		IAI47_08655	0.19	-1.6
1,828,082	-		IAI47_08655	0.19	+2.0
1,828,082	-		IAI47_08655	0.19	+1.4
1,828,158	+		IAI47_08655	0.32	-1.0
1,828,159	-		IAI47_08655	0.32	+1.2
1,828,159	-		IAI47_08655	0.32	+1.6
1,828,159	-		IAI47_08655	0.32	-0.4
1,828,159	-		IAI47_08655	0.32	-1.0
1,828,163	+		IAI47_08655	0.32	-0.5
1,828,164	-		IAI47_08655	0.33	-0.7
1,828,164	-		IAI47_08655	0.33	-0.1
1,828,164	-		IAI47_08655	0.33	+0.9
1,828,258	-		IAI47_08655	0.48	+1.0
1,828,258	-		IAI47_08655	0.48	+0.5
1,828,349	-		IAI47_08655	0.64	+2.0
1,828,349	-		IAI47_08655	0.64	+0.1
1,828,349	-		IAI47_08655	0.64	+0.8
1,828,407	+		IAI47_08655	0.74	+0.0
1,828,408	-		IAI47_08655	0.74	-0.6
1,828,408	-		IAI47_08655	0.74	+1.9
1,828,419	-		IAI47_08655	0.76	+1.2
1,828,471	-		IAI47_08655	0.84	+3.1
1,828,483	-		IAI47_08655	0.86	+0.5
1,828,483	-		IAI47_08655	0.86	+2.1
1,828,483	-		IAI47_08655	0.86	+0.0
1,828,490	-		IAI47_08655	0.88	+2.5
1,828,553	-				-3.0
1,828,553	-				+1.0
1,828,553	-				-0.2
1,828,553	-				-1.0
1,828,594	+				-2.6
1,828,594	+				+1.2
1,828,594	+				+1.8
1,828,595	-				-2.5
1,828,625	-				-0.5
1,828,626	+				-1.8
1,828,626	+				-1.7
1,828,627	-				+0.9
1,828,642	+				+0.6
1,828,643	-				+0.4
1,828,663	+				-1.6
1,828,664	-				-2.3
1,828,690	+				-1.4
1,828,690	+				-2.2
1,828,690	+				+2.6
1,828,690	+				+1.9
1,828,691	-				+2.6
1,828,696	-				+0.1
1,828,696	-				-0.6
1,828,696	-				-0.6
1,828,777	+				+2.0
1,828,777	+				-0.2
1,828,777	+				-0.4
1,828,778	-				+0.9
1,828,778	-				-0.3
1,828,778	-				-1.0
1,828,788	+				-1.1
1,828,789	-				+0.6
1,828,802	+				+0.5
1,828,803	-				+0.2
1,828,812	+				-0.7
1,828,813	-				-0.8
1,828,813	-				-1.7
1,828,813	-				-0.4
1,828,823	+				-2.2
1,828,823	+				+0.4
1,828,823	+				+0.4
1,828,824	-				-2.8
1,828,864	+				+0.6
1,828,865	-				-0.7
1,828,869	+				+2.0
1,828,869	+				-1.4
1,828,870	-				-1.5
1,828,917	+				+0.3
1,828,917	+				+0.4
1,828,917	+				+2.1
1,828,918	-				-1.8
1,828,918	-				+0.1
1,828,955	-				-1.2
1,828,984	-				+1.3
1,828,986	+				-0.4
1,828,986	+				+0.2
1,828,986	+				-0.1
1,828,986	+				+0.0
1,828,986	+				-1.0
1,828,986	+				+0.4
1,828,986	+				+0.4
1,828,986	+				+1.0
1,828,986	+				+0.5
1,828,986	+				+0.4
1,828,986	+				-1.4
1,828,987	-				-0.1
1,828,987	-				-1.0
1,828,987	-				-0.6
1,828,987	-				+0.3
1,828,987	-				+0.9
1,828,987	-				+1.0
1,828,987	-				+1.6
1,828,987	-				+0.6
1,828,987	-				-0.4
1,828,987	-				+0.6
1,828,987	-				+0.3
1,828,987	-				-0.5
1,829,007	+				-0.6
1,829,007	+				+0.3
1,829,007	+				-1.6
1,829,007	+				-1.0
1,829,008	-				+1.3
1,829,008	-				+0.3
1,829,008	-				-0.8
1,829,008	-				-0.6
1,829,008	-				-1.3
1,829,010	-				+0.6
1,829,010	-				-1.9
1,829,010	-				+2.6
1,829,025	+		IAI47_08660	0.10	+1.0
1,829,025	+		IAI47_08660	0.10	-2.0
1,829,025	+		IAI47_08660	0.10	+1.1
1,829,025	+		IAI47_08660	0.10	+1.4
1,829,025	+		IAI47_08660	0.10	+0.4
1,829,025	+		IAI47_08660	0.10	-2.0
1,829,026	-		IAI47_08660	0.10	-2.4
1,829,026	-		IAI47_08660	0.10	-0.4
1,829,176	-		IAI47_08660	0.18	-2.5
1,829,176	-		IAI47_08660	0.18	+0.6
1,829,176	-		IAI47_08660	0.18	-1.7
1,829,176	-		IAI47_08660	0.18	-2.5
1,829,176	-		IAI47_08660	0.18	+1.1
1,829,176	-		IAI47_08660	0.18	-0.4
1,829,251	-		IAI47_08660	0.21	+3.0
1,829,274	+		IAI47_08660	0.22	+0.0
1,829,274	+		IAI47_08660	0.22	-2.4
1,829,274	+		IAI47_08660	0.22	-2.1
1,829,274	+		IAI47_08660	0.22	+0.3
1,829,274	+		IAI47_08660	0.22	-0.4
1,829,275	-		IAI47_08660	0.23	-2.8
1,829,275	-		IAI47_08660	0.23	+1.8
1,829,275	-		IAI47_08660	0.23	-1.8
1,829,275	-		IAI47_08660	0.23	+1.3
1,829,275	-		IAI47_08660	0.23	+0.9
1,829,275	-		IAI47_08660	0.23	-3.2
1,829,275	-		IAI47_08660	0.23	+0.1
1,829,302	-		IAI47_08660	0.24	-1.2
1,829,310	+		IAI47_08660	0.24	+2.6
1,829,310	+		IAI47_08660	0.24	-2.3
1,829,311	-		IAI47_08660	0.24	-0.3
1,829,311	-		IAI47_08660	0.24	-0.0
1,829,316	+		IAI47_08660	0.25	-0.1
1,829,316	+		IAI47_08660	0.25	-1.0
1,829,316	+		IAI47_08660	0.25	-0.6
1,829,316	+		IAI47_08660	0.25	+0.8
1,829,316	+		IAI47_08660	0.25	-1.0
1,829,316	+		IAI47_08660	0.25	-1.0
1,829,316	+		IAI47_08660	0.25	-1.8
1,829,316	+		IAI47_08660	0.25	-0.8
1,829,316	+		IAI47_08660	0.25	-0.1
1,829,317	-		IAI47_08660	0.25	+0.8
1,829,318	+		IAI47_08660	0.25	-3.1
1,829,318	+		IAI47_08660	0.25	+2.7
1,829,319	-		IAI47_08660	0.25	-1.0
1,829,319	-		IAI47_08660	0.25	-1.0
1,829,350	-		IAI47_08660	0.26	-1.0
1,829,355	-		IAI47_08660	0.26	+2.8
1,829,373	+		IAI47_08660	0.27	+0.4
1,829,373	+		IAI47_08660	0.27	-0.5
1,829,373	+		IAI47_08660	0.27	+0.9
1,829,373	+		IAI47_08660	0.27	-0.5
1,829,374	-		IAI47_08660	0.27	-1.2
1,829,443	+		IAI47_08660	0.31	+0.2
1,829,444	-		IAI47_08660	0.31	+1.1
1,829,458	+		IAI47_08660	0.32	+0.7
1,829,459	-		IAI47_08660	0.32	+0.5
1,829,459	-		IAI47_08660	0.32	+0.0
1,829,459	-		IAI47_08660	0.32	-0.4
1,829,459	-		IAI47_08660	0.32	-0.2
1,829,459	-		IAI47_08660	0.32	-2.1
1,829,470	-		IAI47_08660	0.32	-0.7
1,829,492	+		IAI47_08660	0.33	+0.5
1,829,527	+		IAI47_08660	0.35	-0.3