Strain Fitness in Pantoea sp. MT58 around IAI47_06510

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,353,344	+		IAI47_06505	0.53	+1.8
1,353,378	+		IAI47_06505	0.55	-1.4
1,353,378	+		IAI47_06505	0.55	+0.4
1,353,378	+		IAI47_06505	0.55	+0.4
1,353,378	+		IAI47_06505	0.55	+1.0
1,353,379	-		IAI47_06505	0.55	+0.1
1,353,379	-		IAI47_06505	0.55	+0.3
1,353,379	-		IAI47_06505	0.55	-0.9
1,353,379	-		IAI47_06505	0.55	-0.4
1,353,379	-		IAI47_06505	0.55	+0.3
1,353,379	-		IAI47_06505	0.55	-0.4
1,353,405	+		IAI47_06505	0.56	+0.5
1,353,405	+		IAI47_06505	0.56	+1.0
1,353,405	+		IAI47_06505	0.56	-0.0
1,353,438	-		IAI47_06505	0.58	+1.2
1,353,453	-		IAI47_06505	0.58	+1.6
1,353,642	+		IAI47_06505	0.67	+0.9
1,353,642	+		IAI47_06505	0.67	+1.1
1,353,642	+		IAI47_06505	0.67	-1.9
1,353,642	+		IAI47_06505	0.67	-0.5
1,353,642	+		IAI47_06505	0.67	+2.8
1,353,643	-		IAI47_06505	0.67	-0.7
1,353,643	-		IAI47_06505	0.67	-0.0
1,353,648	+		IAI47_06505	0.68	-1.8
1,353,648	+		IAI47_06505	0.68	-1.2
1,353,648	+		IAI47_06505	0.68	-0.0
1,353,648	+		IAI47_06505	0.68	-2.9
1,353,648	+		IAI47_06505	0.68	+0.7
1,353,648	+		IAI47_06505	0.68	-1.7
1,353,649	-		IAI47_06505	0.68	-0.1
1,353,649	-		IAI47_06505	0.68	-1.1
1,353,649	-		IAI47_06505	0.68	+2.3
1,353,649	-		IAI47_06505	0.68	-0.9
1,353,649	-		IAI47_06505	0.68	+0.6
1,353,659	+		IAI47_06505	0.68	+0.3
1,353,660	-		IAI47_06505	0.68	+1.4
1,353,728	+		IAI47_06505	0.71	-0.6
1,353,819	-		IAI47_06505	0.76	+0.2
1,353,962	+		IAI47_06505	0.82	-0.2
1,353,962	+		IAI47_06505	0.82	-1.4
1,353,962	+		IAI47_06505	0.82	+0.6
1,353,963	-		IAI47_06505	0.82	+0.5
1,353,963	-		IAI47_06505	0.82	-1.0
1,354,013	+		IAI47_06505	0.85	+1.6
1,354,013	+		IAI47_06505	0.85	+1.1
1,354,013	+				+1.6
1,354,013	+		IAI47_06505	0.85	-1.2
1,354,013	+		IAI47_06505	0.85	+0.1
1,354,013	+		IAI47_06505	0.85	-0.6
1,354,014	-		IAI47_06505	0.85	-0.6
1,354,014	-		IAI47_06505	0.85	-1.2
1,354,014	-		IAI47_06505	0.85	-0.0
1,354,014	-		IAI47_06505	0.85	-1.3
1,354,014	-		IAI47_06505	0.85	-1.0
1,354,016	+		IAI47_06505	0.85	-1.0
1,354,016	+		IAI47_06505	0.85	-2.1
1,354,016	+		IAI47_06505	0.85	+0.9
1,354,017	-		IAI47_06505	0.85	+2.5
1,354,017	-		IAI47_06505	0.85	+1.2
1,354,017	-		IAI47_06505	0.85	-1.7
1,354,238	+				-0.6
1,354,238	+				+0.2
1,354,239	-				-1.2
1,354,239	-				-0.7
1,354,239	-				+1.3
1,354,239	-				-1.7
1,354,239	-				+1.1
1,354,239	-				-0.4
1,354,239	-				-0.7
1,354,239	-				-0.6
1,354,316	+				-1.6
1,354,325	+				+1.6
1,354,325	+				-0.2
1,354,326	-				-1.0
1,354,326	-				+1.2
1,354,360	+				+1.3
1,354,399	+				-0.6
1,354,429	-				+0.3
1,354,549	+		IAI47_06510	0.18	+2.0
1,354,549	+		IAI47_06510	0.18	+0.4
1,354,549	+		IAI47_06510	0.18	-1.4
1,354,549	+		IAI47_06510	0.18	-1.0
1,354,550	-		IAI47_06510	0.18	+0.4
1,354,550	-		IAI47_06510	0.18	+1.7
1,354,550	-		IAI47_06510	0.18	+0.1
1,354,550	-		IAI47_06510	0.18	-1.1
1,354,550	-		IAI47_06510	0.18	-0.6
1,354,642	+		IAI47_06510	0.26	-1.4
1,354,642	+		IAI47_06510	0.26	+1.4
1,354,642	+		IAI47_06510	0.26	-1.4
1,354,642	+		IAI47_06510	0.26	-0.2
1,354,643	-		IAI47_06510	0.26	+0.4
1,354,745	-		IAI47_06510	0.35	+1.6
1,354,763	+		IAI47_06510	0.36	+3.1
1,354,781	-		IAI47_06510	0.38	-1.3
1,354,920	+		IAI47_06510	0.50	-0.5
1,354,920	+		IAI47_06510	0.50	-0.0
1,354,920	+		IAI47_06510	0.50	-0.7
1,354,921	-		IAI47_06510	0.50	+0.2
1,354,921	-		IAI47_06510	0.50	+0.4
1,354,952	+		IAI47_06510	0.52	+0.7
1,354,952	+		IAI47_06510	0.52	-0.1
1,354,952	+		IAI47_06510	0.52	+0.2
1,354,952	+		IAI47_06510	0.52	-0.1
1,354,953	-		IAI47_06510	0.52	+2.0
1,354,953	-		IAI47_06510	0.52	+0.1
1,354,953	-		IAI47_06510	0.52	+0.2
1,354,953	-		IAI47_06510	0.52	-2.2
1,354,953	-		IAI47_06510	0.52	+2.2
1,355,058	-		IAI47_06510	0.61	+0.3
1,355,058	-		IAI47_06510	0.61	-2.7
1,355,087	-		IAI47_06510	0.64	-0.2
1,355,087	-		IAI47_06510	0.64	-1.4
1,355,112	+		IAI47_06510	0.66	+1.7
1,355,112	+		IAI47_06510	0.66	-1.1
1,355,112	+		IAI47_06510	0.66	-0.9
1,355,129	-		IAI47_06510	0.67	+0.8
1,355,254	+		IAI47_06510	0.78	-2.3
1,355,254	+		IAI47_06510	0.78	-0.8
1,355,254	+		IAI47_06510	0.78	-0.6
1,355,254	+		IAI47_06510	0.78	-1.9
1,355,255	-		IAI47_06510	0.78	-1.6
1,355,255	-		IAI47_06510	0.78	-0.2
1,355,258	+		IAI47_06510	0.78	-0.2
1,355,259	-		IAI47_06510	0.79	-0.5
1,355,259	-		IAI47_06510	0.79	-1.9
1,355,259	-		IAI47_06510	0.79	+0.7
1,355,330	+		IAI47_06510	0.85	-0.5
1,355,330	+		IAI47_06510	0.85	-2.1
1,355,331	-		IAI47_06510	0.85	-0.7
1,355,331	-		IAI47_06510	0.85	+1.6
1,355,331	-		IAI47_06510	0.85	+0.5
1,355,331	-		IAI47_06510	0.85	+1.0
1,355,333	+		IAI47_06510	0.85	-1.1
1,355,333	+		IAI47_06510	0.85	-1.4
1,355,333	+		IAI47_06510	0.85	-1.0
1,355,333	+		IAI47_06510	0.85	+1.8
1,355,333	+		IAI47_06510	0.85	-0.4
1,355,333	+		IAI47_06510	0.85	-1.7
1,355,334	-		IAI47_06510	0.85	+1.8
1,355,334	-		IAI47_06510	0.85	+1.0
1,355,334	-		IAI47_06510	0.85	+0.3
1,355,334	-		IAI47_06510	0.85	+0.1
1,355,334	-		IAI47_06510	0.85	-3.2
1,355,336	+		IAI47_06510	0.85	-0.9
1,355,345	+		IAI47_06510	0.86	+0.6
1,355,345	+		IAI47_06510	0.86	-1.1
1,355,345	+		IAI47_06510	0.86	-0.3
1,355,346	-		IAI47_06510	0.86	-0.8
1,355,346	-		IAI47_06510	0.86	-2.2
1,355,460	-				-2.0
1,355,479	+				+0.9
1,355,532	+				+5.5
1,355,532	+				-1.6
1,355,533	-				-0.5
1,355,533	-				-2.0
1,355,533	-				-0.0
1,355,544	+				-1.5
1,355,545	-				+2.0
1,355,553	-				-0.2
1,355,579	-				+2.3
1,355,665	+				+2.4
1,355,665	+				-0.3
1,355,666	-				-1.2
1,355,667	+				+0.0
1,355,667	+				-0.4
1,355,668	-				-1.9
1,355,671	-				-0.7
1,355,671	-				+0.8
1,355,671	-				+1.0
1,355,723	+				-0.5
1,355,734	-				-1.2
1,355,734	-				+1.6
1,355,760	-				+0.2
1,355,760	-				+0.3
1,355,762	+				-1.5
1,355,762	+				+1.7
1,355,763	-				+1.3
1,355,770	+				-1.5
1,355,795	+				-1.3
1,355,795	+				-0.3
1,355,795	+				-2.3
1,355,795	+				+0.1
1,355,796	-				+1.5
1,355,810	+				+2.4
1,355,850	-				+0.4
1,355,861	-				+1.4
1,355,925	+				-0.2
1,355,925	+				+1.1
1,355,926	-				-1.7
1,355,926	-				-0.0
1,355,941	-				+0.3
1,355,953	-				-1.7
1,356,009	+				+1.2
1,356,010	-				-0.8
1,356,052	+				+0.7
1,356,053	-				-0.4
1,356,079	-				+0.6
1,356,088	+				-1.7
1,356,090	+				-0.9
1,356,090	+				-1.0
1,356,090	+				-1.7
1,356,091	-				-0.4
1,356,091	-				-2.3
1,356,100	+				+1.7
1,356,182	+				-0.5
1,356,183	-				+4.1
1,356,184	+				-1.2
1,356,184	+				+2.8
1,356,187	+				+0.8
1,356,187	+				+0.3
1,356,188	-				+1.6
1,356,188	-				-0.1
1,356,205	-				-0.6
1,356,218	-				-0.5
1,356,236	+		IAI47_06515	0.12	+0.4
1,356,236	+		IAI47_06515	0.12	+0.1
1,356,236	+		IAI47_06515	0.12	-1.0
1,356,237	-		IAI47_06515	0.12	-1.0
1,356,237	-		IAI47_06515	0.12	-2.5
1,356,237	-		IAI47_06515	0.12	-0.0
1,356,275	+		IAI47_06515	0.15	-0.2
1,356,275	+		IAI47_06515	0.15	+0.3
1,356,275	+		IAI47_06515	0.15	+0.2
1,356,275	+		IAI47_06515	0.15	+1.2
1,356,275	+		IAI47_06515	0.15	-1.0
1,356,276	-		IAI47_06515	0.15	+0.4
1,356,276	-		IAI47_06515	0.15	-0.3
1,356,276	-		IAI47_06515	0.15	-1.2
1,356,276	-		IAI47_06515	0.15	+0.1
1,356,276	-		IAI47_06515	0.15	-1.9
1,356,344	+		IAI47_06515	0.21	-1.0
1,356,344	+		IAI47_06515	0.21	-0.3
1,356,357	+		IAI47_06515	0.22	+1.3
1,356,357	+		IAI47_06515	0.22	-1.6
1,356,357	+		IAI47_06515	0.22	+2.6
1,356,358	-		IAI47_06515	0.23	+1.4
1,356,446	+		IAI47_06515	0.30	-1.0
1,356,446	+		IAI47_06515	0.30	-0.3
1,356,447	-		IAI47_06515	0.31	+0.7
1,356,447	-		IAI47_06515	0.31	-1.8
1,356,454	+		IAI47_06515	0.31	-0.2
1,356,454	+		IAI47_06515	0.31	+0.6
1,356,454	+		IAI47_06515	0.31	-0.7
1,356,455	-		IAI47_06515	0.31	+0.3
1,356,455	-		IAI47_06515	0.31	+0.3
1,356,465	+		IAI47_06515	0.32	+0.3
1,356,470	+		IAI47_06515	0.33	-0.1
1,356,470	+		IAI47_06515	0.33	-1.7
1,356,470	+		IAI47_06515	0.33	-1.4
1,356,470	+		IAI47_06515	0.33	+0.2
1,356,470	+		IAI47_06515	0.33	-0.1
1,356,470	+		IAI47_06515	0.33	+2.3
1,356,470	+		IAI47_06515	0.33	-1.0
1,356,471	-		IAI47_06515	0.33	-0.9
1,356,471	-		IAI47_06515	0.33	+0.4
1,356,471	-		IAI47_06515	0.33	-2.4
1,356,471	-		IAI47_06515	0.33	-1.9
1,356,471	-		IAI47_06515	0.33	+0.9
1,356,471	-		IAI47_06515	0.33	-2.3
1,356,471	-		IAI47_06515	0.33	+0.6
1,356,471	-		IAI47_06515	0.33	-0.8