Strain Fitness in Pantoea sp. MT58 around IAI47_06195

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,259,367	+		IAI47_06185	0.70	-0.0
1,259,367	+		IAI47_06185	0.70	+0.5
1,259,367	+		IAI47_06185	0.70	+0.4
1,259,368	-		IAI47_06185	0.70	+0.7
1,259,368	-		IAI47_06185	0.70	-1.3
1,259,368	-		IAI47_06185	0.70	-1.0
1,259,412	+		IAI47_06185	0.73	-1.5
1,259,412	+		IAI47_06185	0.73	-2.2
1,259,413	-		IAI47_06185	0.73	+0.3
1,259,413	-		IAI47_06185	0.73	-0.0
1,259,568	-		IAI47_06185	0.84	-0.9
1,259,593	+		IAI47_06185	0.86	+1.1
1,259,593	+		IAI47_06185	0.86	+1.0
1,259,594	-		IAI47_06185	0.86	-1.9
1,259,594	-		IAI47_06185	0.86	+0.5
1,259,594	-		IAI47_06185	0.86	+1.1
1,259,618	-		IAI47_06185	0.87	-1.0
1,259,618	-		IAI47_06185	0.87	-1.6
1,259,679	+				-1.7
1,259,679	+				+1.5
1,259,680	-				-0.2
1,259,781	+				+0.6
1,259,781	+				-0.5
1,259,782	-				+3.0
1,259,782	-				+0.3
1,259,798	+				+0.2
1,259,798	+				+1.4
1,259,798	+				-0.2
1,259,799	-				-0.0
1,259,799	-				-2.4
1,259,827	+				-1.7
1,259,833	+				-1.3
1,259,834	-				-0.0
1,259,852	+				+0.0
1,259,885	+				+0.2
1,259,885	+				-2.3
1,259,885	+				-1.3
1,259,885	+				+0.3
1,259,885	+				+0.1
1,259,885	+				+0.3
1,259,886	-				-2.2
1,259,886	-				-1.6
1,259,886	-				-0.5
1,259,886	-				-1.1
1,259,886	-				+0.0
1,259,886	-				+1.7
1,259,899	+				+2.3
1,259,937	+		IAI47_06190	0.11	+0.0
1,259,959	-		IAI47_06190	0.16	-1.0
1,259,961	+		IAI47_06190	0.17	+1.4
1,259,961	+		IAI47_06190	0.17	+0.1
1,260,011	+		IAI47_06190	0.28	-0.6
1,260,135	+		IAI47_06190	0.56	-0.9
1,260,136	-		IAI47_06190	0.56	-1.9
1,260,136	-		IAI47_06190	0.56	-2.3
1,260,136	-		IAI47_06190	0.56	-0.2
1,260,136	-		IAI47_06190	0.56	-1.3
1,260,144	+		IAI47_06190	0.58	-0.2
1,260,144	+		IAI47_06190	0.58	+0.0
1,260,145	-		IAI47_06190	0.58	-1.3
1,260,145	-		IAI47_06190	0.58	-1.2
1,260,165	-		IAI47_06190	0.63	-1.4
1,260,214	+		IAI47_06190	0.74	-0.5
1,260,215	-		IAI47_06190	0.74	-1.3
1,260,223	+		IAI47_06190	0.76	-1.0
1,260,223	+		IAI47_06190	0.76	-2.8
1,260,327	+				+0.1
1,260,327	+				+0.4
1,260,327	+				+1.2
1,260,328	-				-0.9
1,260,328	-				-1.3
1,260,349	+				-1.1
1,260,375	+				-1.3
1,260,375	+				-1.5
1,260,375	+				-0.5
1,260,376	-				+0.7
1,260,376	-				+0.4
1,260,603	-		IAI47_06195	0.26	-1.8
1,260,713	+		IAI47_06195	0.36	+1.5
1,260,714	-		IAI47_06195	0.37	-0.6
1,260,804	+		IAI47_06195	0.45	-2.0
1,260,852	+		IAI47_06195	0.50	-1.5
1,260,852	+		IAI47_06195	0.50	+0.7
1,260,852	+		IAI47_06195	0.50	+0.1
1,260,853	-		IAI47_06195	0.50	-0.6
1,260,853	-		IAI47_06195	0.50	-1.3
1,260,876	+		IAI47_06195	0.52	-0.7
1,261,006	-		IAI47_06195	0.64	-0.1
1,261,029	+		IAI47_06195	0.67	-0.8
1,261,103	-		IAI47_06195	0.74	-2.4
1,261,103	-		IAI47_06195	0.74	-2.4
1,261,110	+		IAI47_06195	0.74	-1.0
1,261,110	+		IAI47_06195	0.74	-2.5
1,261,113	+		IAI47_06195	0.75	+0.5
1,261,113	+		IAI47_06195	0.75	+0.9
1,261,113	+		IAI47_06195	0.75	-1.9
1,261,113	+		IAI47_06195	0.75	+0.5
1,261,114	-		IAI47_06195	0.75	-0.3
1,261,114	-		IAI47_06195	0.75	-1.0
1,261,114	-		IAI47_06195	0.75	-0.0
1,261,114	-		IAI47_06195	0.75	-1.0
1,261,118	+		IAI47_06195	0.75	-2.7
1,261,118	+		IAI47_06195	0.75	+0.3
1,261,119	-		IAI47_06195	0.75	-3.0
1,261,119	-		IAI47_06195	0.75	+0.4
1,261,212	+		IAI47_06195	0.84	-0.0
1,261,212	+		IAI47_06195	0.84	+0.6
1,261,233	+		IAI47_06195	0.86	-2.3
1,261,233	+		IAI47_06195	0.86	-1.1
1,261,234	-		IAI47_06195	0.86	-1.6
1,261,234	-		IAI47_06195	0.86	+4.0
1,261,234	-		IAI47_06195	0.86	+0.2
1,261,234	-		IAI47_06195	0.86	+1.1
1,261,234	-		IAI47_06195	0.86	+0.4
1,261,252	+		IAI47_06195	0.88	-0.3
1,261,252	+		IAI47_06195	0.88	-0.9
1,261,253	-		IAI47_06195	0.88	-1.0
1,261,253	-		IAI47_06195	0.88	-1.0
1,261,253	-		IAI47_06195	0.88	-0.0
1,261,253	-		IAI47_06195	0.88	-0.5
1,261,253	-		IAI47_06195	0.88	-2.2
1,261,365	+				+1.0
1,261,366	-				-1.4
1,261,428	+				-2.3
1,261,429	-				-2.7
1,261,438	+				-1.6
1,261,438	+				-0.0
1,261,439	-				+1.5
1,261,439	-				-1.0
1,261,492	+				+0.0
1,261,493	-				-2.4
1,261,493	-				-0.7
1,261,584	-				-1.9
1,261,713	-		IAI47_06200	0.15	-1.7
1,261,721	+		IAI47_06200	0.15	-2.3
1,261,721	+		IAI47_06200	0.15	-2.1
1,261,721	+		IAI47_06200	0.15	+0.9
1,261,721	+		IAI47_06200	0.15	-1.4
1,261,721	+		IAI47_06200	0.15	+1.2
1,261,721	+		IAI47_06200	0.15	-0.7
1,261,721	+		IAI47_06200	0.15	-0.4
1,261,721	+		IAI47_06200	0.15	+0.2
1,261,722	-		IAI47_06200	0.15	-0.8
1,261,722	-		IAI47_06200	0.15	+0.7
1,261,722	-		IAI47_06200	0.15	-1.8
1,261,722	-		IAI47_06200	0.15	-1.8
1,261,722	-		IAI47_06200	0.15	+0.3
1,261,722	-		IAI47_06200	0.15	-1.9
1,261,723	+		IAI47_06200	0.15	-0.9
1,261,723	+		IAI47_06200	0.15	-2.0
1,261,724	-		IAI47_06200	0.15	+0.8
1,261,724	-		IAI47_06200	0.15	+1.1
1,261,724	-		IAI47_06200	0.15	+0.4
1,261,724	-		IAI47_06200	0.15	+1.7
1,261,734	-		IAI47_06200	0.16	+2.0
1,261,734	-		IAI47_06200	0.16	-0.4
1,261,802	+		IAI47_06200	0.21	-2.8
1,261,842	+		IAI47_06200	0.23	+2.6
1,261,843	-		IAI47_06200	0.23	+0.4
1,261,874	+		IAI47_06200	0.25	+0.6
1,261,874	+		IAI47_06200	0.25	+0.0
1,261,893	+		IAI47_06200	0.27	-0.6
1,261,893	+		IAI47_06200	0.27	+0.4
1,261,893	+		IAI47_06200	0.27	-0.1
1,261,893	+		IAI47_06200	0.27	+0.2
1,261,893	+		IAI47_06200	0.27	-0.2
1,261,893	+		IAI47_06200	0.27	-2.8
1,261,893	+		IAI47_06200	0.27	-0.2
1,261,893	+		IAI47_06200	0.27	-0.7
1,261,893	+		IAI47_06200	0.27	-2.4
1,261,893	+		IAI47_06200	0.27	+1.3
1,261,893	+		IAI47_06200	0.27	-0.0
1,261,893	+		IAI47_06200	0.27	-2.6
1,261,893	+		IAI47_06200	0.27	+0.8
1,261,894	-		IAI47_06200	0.27	-1.1
1,261,894	-		IAI47_06200	0.27	+0.6
1,261,894	-		IAI47_06200	0.27	-1.0
1,261,894	-		IAI47_06200	0.27	+1.6
1,261,894	-		IAI47_06200	0.27	+0.6
1,261,894	-		IAI47_06200	0.27	-0.6
1,261,934	+		IAI47_06200	0.29	+0.4
1,261,934	+		IAI47_06200	0.29	+0.3
1,261,934	+		IAI47_06200	0.29	+1.1
1,261,934	+		IAI47_06200	0.29	-0.3
1,261,934	+		IAI47_06200	0.29	-2.0
1,261,934	+		IAI47_06200	0.29	-1.0
1,261,935	-		IAI47_06200	0.29	+0.4
1,261,935	-		IAI47_06200	0.29	-3.4
1,261,935	-		IAI47_06200	0.29	-0.4
1,261,935	-		IAI47_06200	0.29	-2.1
1,261,978	+		IAI47_06200	0.32	-1.4
1,261,979	-		IAI47_06200	0.32	-0.4
1,261,979	-		IAI47_06200	0.32	+0.4
1,262,028	-		IAI47_06200	0.36	+1.3
1,262,049	-		IAI47_06200	0.37	-0.0
1,262,049	-		IAI47_06200	0.37	+0.0
1,262,105	+		IAI47_06200	0.41	+0.5
1,262,155	+		IAI47_06200	0.44	-2.4
1,262,155	+		IAI47_06200	0.44	+1.2
1,262,155	+		IAI47_06200	0.44	-2.0
1,262,156	-		IAI47_06200	0.44	-0.6
1,262,162	+		IAI47_06200	0.45	-1.8
1,262,162	+		IAI47_06200	0.45	-0.7
1,262,163	-		IAI47_06200	0.45	+2.2
1,262,163	-		IAI47_06200	0.45	+1.4
1,262,163	-		IAI47_06200	0.45	+1.2
1,262,163	-		IAI47_06200	0.45	-1.3
1,262,163	-		IAI47_06200	0.45	-0.4
1,262,163	-		IAI47_06200	0.45	-2.4
1,262,193	+		IAI47_06200	0.47	+0.6
1,262,194	-		IAI47_06200	0.47	-0.0
1,262,194	-		IAI47_06200	0.47	-2.1
1,262,194	-		IAI47_06200	0.47	+1.1
1,262,194	-		IAI47_06200	0.47	+0.3
1,262,249	+		IAI47_06200	0.50	-0.4
1,262,250	-		IAI47_06200	0.50	+1.2
1,262,322	+		IAI47_06200	0.55	+0.2
1,262,322	+		IAI47_06200	0.55	-0.3
1,262,322	+		IAI47_06200	0.55	-0.6
1,262,322	+		IAI47_06200	0.55	+0.1
1,262,323	-		IAI47_06200	0.55	+0.6