Strain Fitness in Pantoea sp. MT58 around IAI47_05995

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,223,851	+				-0.5
1,223,851	+				-0.5
1,223,851	+				-2.6
1,223,851	+				-0.4
1,223,852	-				-0.5
1,223,852	-				+0.0
1,223,852	-				-2.1
1,223,858	+				+0.5
1,223,858	+				+0.2
1,223,858	+				+0.1
1,223,858	+				+0.2
1,223,859	-				+0.3
1,223,859	-				-1.0
1,223,867	+				-0.2
1,223,867	+				+4.3
1,223,895	+				+1.8
1,223,896	+				-0.6
1,223,896	+				+0.6
1,223,896	+				-2.6
1,223,897	-				+0.5
1,223,897	-				-0.2
1,224,000	+		IAI47_05985	0.26	+1.6
1,224,000	+		IAI47_05985	0.26	+1.3
1,224,001	-		IAI47_05985	0.26	-2.6
1,224,001	-		IAI47_05985	0.26	+0.9
1,224,001	-		IAI47_05985	0.26	+0.2
1,224,001	-		IAI47_05985	0.26	-0.4
1,224,001	-		IAI47_05985	0.26	+0.1
1,224,001	-		IAI47_05985	0.26	-0.7
1,224,001	-		IAI47_05985	0.26	+1.4
1,224,100	+		IAI47_05985	0.43	+2.1
1,224,117	+		IAI47_05985	0.46	+0.1
1,224,118	-		IAI47_05985	0.46	+0.1
1,224,118	-		IAI47_05985	0.46	+2.8
1,224,118	-		IAI47_05985	0.46	+0.3
1,224,183	+		IAI47_05985	0.58	+0.0
1,224,183	+		IAI47_05985	0.58	+0.7
1,224,183	+		IAI47_05985	0.58	-2.8
1,224,183	+		IAI47_05985	0.58	-2.7
1,224,184	-		IAI47_05985	0.58	+0.0
1,224,184	-		IAI47_05985	0.58	-0.2
1,224,184	-		IAI47_05985	0.58	+2.6
1,224,184	-		IAI47_05985	0.58	+0.0
1,224,200	-		IAI47_05985	0.61	+0.8
1,224,241	+		IAI47_05985	0.68	-1.4
1,224,241	+		IAI47_05985	0.68	+2.0
1,224,241	+		IAI47_05985	0.68	+1.0
1,224,242	-		IAI47_05985	0.68	-0.1
1,224,293	+		IAI47_05985	0.77	+0.9
1,224,293	+		IAI47_05985	0.77	-1.6
1,224,294	-		IAI47_05985	0.77	-2.3
1,224,294	-		IAI47_05985	0.77	+3.7
1,224,294	-		IAI47_05985	0.77	+0.1
1,224,294	-		IAI47_05985	0.77	-0.8
1,224,296	+		IAI47_05985	0.77	+0.5
1,224,398	+				-1.3
1,224,398	+				-0.7
1,224,398	+				+0.3
1,224,399	-				-1.9
1,224,399	-				-0.0
1,224,399	-				-2.8
1,224,399	-				-0.3
1,224,399	-				+0.5
1,224,399	-				-1.9
1,224,411	+				+1.4
1,224,412	-				-0.1
1,224,412	-				-0.3
1,224,423	+				-0.7
1,224,423	+				+0.2
1,224,423	+				+1.1
1,224,423	+				+1.2
1,224,427	+				-1.7
1,224,427	+				+0.0
1,224,427	+				+0.8
1,224,427	+				-0.2
1,224,427	+				+0.2
1,224,427	+				-0.7
1,224,427	+				-2.1
1,224,427	+				-0.5
1,224,427	+				-0.1
1,224,427	+				+0.9
1,224,428	-				+2.8
1,224,428	-				+0.7
1,224,428	-				+2.0
1,224,428	-				+2.0
1,224,428	-				-0.8
1,224,428	-				-0.1
1,224,428	-				-1.2
1,224,428	-				-2.5
1,224,428	-				+0.3
1,224,428	-				-0.5
1,224,428	-				+0.9
1,224,437	+				+0.4
1,224,437	+				+0.1
1,224,438	-				-0.1
1,224,450	+				+0.9
1,224,450	+				-1.6
1,224,461	-		IAI47_05990	0.11	-3.0
1,224,475	+		IAI47_05990	0.16	+0.5
1,224,487	+		IAI47_05990	0.19	+0.3
1,224,488	-		IAI47_05990	0.20	-0.7
1,224,497	+		IAI47_05990	0.23	+0.0
1,224,497	+		IAI47_05990	0.23	+0.4
1,224,497	+		IAI47_05990	0.23	-0.2
1,224,497	+		IAI47_05990	0.23	-1.0
1,224,497	+		IAI47_05990	0.23	+0.5
1,224,497	+		IAI47_05990	0.23	+0.7
1,224,497	+		IAI47_05990	0.23	-0.1
1,224,497	+		IAI47_05990	0.23	+1.0
1,224,497	+		IAI47_05990	0.23	+0.4
1,224,497	+		IAI47_05990	0.23	-1.0
1,224,498	-		IAI47_05990	0.23	-2.2
1,224,498	-		IAI47_05990	0.23	-2.2
1,224,498	-		IAI47_05990	0.23	-0.7
1,224,498	-		IAI47_05990	0.23	+2.7
1,224,498	-		IAI47_05990	0.23	-1.6
1,224,498	-		IAI47_05990	0.23	+0.7
1,224,498	-		IAI47_05990	0.23	+2.1
1,224,498	-		IAI47_05990	0.23	+1.9
1,224,498	-		IAI47_05990	0.23	+0.7
1,224,498	-		IAI47_05990	0.23	+0.1
1,224,498	-		IAI47_05990	0.23	+0.5
1,224,498	-		IAI47_05990	0.23	-2.1
1,224,498	-		IAI47_05990	0.23	+0.8
1,224,504	+		IAI47_05990	0.25	+1.3
1,224,504	+		IAI47_05990	0.25	+1.6
1,224,504	+		IAI47_05990	0.25	-1.1
1,224,504	+		IAI47_05990	0.25	+0.7
1,224,505	-		IAI47_05990	0.25	+0.3
1,224,505	-		IAI47_05990	0.25	+0.4
1,224,505	-		IAI47_05990	0.25	-0.5
1,224,505	-		IAI47_05990	0.25	+0.6
1,224,505	-		IAI47_05990	0.25	-0.0
1,224,510	+		IAI47_05990	0.27	-0.3
1,224,511	-		IAI47_05990	0.27	+0.6
1,224,511	-		IAI47_05990	0.27	+0.4
1,224,511	-		IAI47_05990	0.27	-1.2
1,224,511	-		IAI47_05990	0.27	-1.4
1,224,560	-		IAI47_05990	0.44	-2.1
1,224,560	-		IAI47_05990	0.44	+1.1
1,224,570	+		IAI47_05990	0.47	-1.2
1,224,570	+		IAI47_05990	0.47	-0.1
1,224,589	+		IAI47_05990	0.53	+1.9
1,224,606	+		IAI47_05990	0.59	+0.4
1,224,620	+		IAI47_05990	0.63	+1.5
1,224,620	+		IAI47_05990	0.63	-0.5
1,224,620	+		IAI47_05990	0.63	+0.5
1,224,620	+		IAI47_05990	0.63	+0.6
1,224,620	+		IAI47_05990	0.63	+1.5
1,224,620	+		IAI47_05990	0.63	+0.7
1,224,620	+		IAI47_05990	0.63	+0.4
1,224,621	-		IAI47_05990	0.64	-0.5
1,224,625	+		IAI47_05990	0.65	-2.2
1,224,625	+		IAI47_05990	0.65	+0.5
1,224,625	+		IAI47_05990	0.65	-0.0
1,224,625	+		IAI47_05990	0.65	-0.9
1,224,626	-		IAI47_05990	0.65	-1.3
1,224,626	-		IAI47_05990	0.65	+0.5
1,224,713	+				+0.3
1,224,713	+				+0.2
1,224,713	+				+0.5
1,224,713	+				-0.7
1,224,714	-				-0.7
1,224,714	-				+0.3
1,224,714	-				+1.1
1,224,714	-				-2.5
1,224,720	+				-1.3
1,224,720	+				+0.9
1,224,721	-				+0.9
1,224,819	-				-1.0
1,224,822	+				-0.5
1,224,822	+				+0.8
1,224,823	-				+0.7
1,224,823	-				+0.5
1,224,823	-				+0.2
1,224,867	+		IAI47_05995	0.13	+2.8
1,224,874	+		IAI47_05995	0.13	-0.0
1,224,876	+		IAI47_05995	0.13	-1.1
1,224,876	+		IAI47_05995	0.13	+4.0
1,224,876	+		IAI47_05995	0.13	+0.0
1,224,891	+		IAI47_05995	0.15	-0.4
1,224,891	+		IAI47_05995	0.15	-0.9
1,224,891	+		IAI47_05995	0.15	+0.8
1,224,987	+		IAI47_05995	0.24	+0.3
1,224,987	+		IAI47_05995	0.24	+0.7
1,224,987	+		IAI47_05995	0.24	+0.2
1,224,996	+		IAI47_05995	0.25	-2.0
1,224,996	+		IAI47_05995	0.25	+2.8
1,224,996	+		IAI47_05995	0.25	-0.0
1,224,996	+		IAI47_05995	0.25	-0.3
1,224,996	+		IAI47_05995	0.25	-0.9
1,224,996	+		IAI47_05995	0.25	-0.7
1,224,996	+		IAI47_05995	0.25	+0.3
1,224,997	-		IAI47_05995	0.25	+2.2
1,224,997	-		IAI47_05995	0.25	+0.0
1,224,997	-		IAI47_05995	0.25	+1.0
1,225,008	+		IAI47_05995	0.26	+1.4
1,225,008	+		IAI47_05995	0.26	-0.2
1,225,009	-		IAI47_05995	0.26	-1.1
1,225,009	-		IAI47_05995	0.26	-0.7
1,225,009	-		IAI47_05995	0.26	-1.9
1,225,009	-		IAI47_05995	0.26	-0.1
1,225,009	-		IAI47_05995	0.26	+1.8
1,225,050	-		IAI47_05995	0.30	-0.8
1,225,050	-		IAI47_05995	0.30	-0.1
1,225,105	+		IAI47_05995	0.35	+0.4
1,225,105	+		IAI47_05995	0.35	-0.9
1,225,105	+		IAI47_05995	0.35	+2.8
1,225,105	+		IAI47_05995	0.35	+1.0
1,225,105	+		IAI47_05995	0.35	+0.5
1,225,105	+		IAI47_05995	0.35	+2.0
1,225,105	+		IAI47_05995	0.35	+1.7
1,225,105	+		IAI47_05995	0.35	+0.8
1,225,105	+		IAI47_05995	0.35	+2.5
1,225,105	+		IAI47_05995	0.35	-1.5
1,225,105	+		IAI47_05995	0.35	+0.5
1,225,105	+		IAI47_05995	0.35	-0.8
1,225,105	+		IAI47_05995	0.35	-0.2
1,225,105	+		IAI47_05995	0.35	-0.5
1,225,105	+		IAI47_05995	0.35	-0.0
1,225,105	+		IAI47_05995	0.35	+2.2
1,225,105	+		IAI47_05995	0.35	-1.3
1,225,105	+		IAI47_05995	0.35	-0.6
1,225,106	-		IAI47_05995	0.35	+2.2
1,225,106	-		IAI47_05995	0.35	+0.2
1,225,106	-		IAI47_05995	0.35	-0.2
1,225,106	-		IAI47_05995	0.35	+0.5
1,225,106	-		IAI47_05995	0.35	-1.2
1,225,106	-		IAI47_05995	0.35	+0.3
1,225,106	-		IAI47_05995	0.35	-0.8
1,225,106	-		IAI47_05995	0.35	+1.6
1,225,106	-		IAI47_05995	0.35	+0.4
1,225,106	-		IAI47_05995	0.35	-1.2
1,225,106	-		IAI47_05995	0.35	+0.5
1,225,106	-		IAI47_05995	0.35	-1.1
1,225,106	-		IAI47_05995	0.35	+1.9
1,225,106	-		IAI47_05995	0.35	+0.7
1,225,106	-		IAI47_05995	0.35	+3.4
1,225,106	-		IAI47_05995	0.35	+0.2
1,225,106	-		IAI47_05995	0.35	+1.5
1,225,106	-		IAI47_05995	0.35	-0.2
1,225,106	-		IAI47_05995	0.35	-3.6
1,225,106	-		IAI47_05995	0.35	+0.7
1,225,106	-		IAI47_05995	0.35	+0.2
1,225,107	+		IAI47_05995	0.35	-0.8
1,225,107	+		IAI47_05995	0.35	-0.7
1,225,107	+		IAI47_05995	0.35	+0.4
1,225,108	-		IAI47_05995	0.35	-1.5
1,225,170	-		IAI47_05995	0.41	-1.3
1,225,180	+		IAI47_05995	0.42	+0.5
1,225,271	+		IAI47_05995	0.50	+0.9
1,225,271	+		IAI47_05995	0.50	+1.0
1,225,271	+		IAI47_05995	0.50	-2.2
1,225,289	+		IAI47_05995	0.52	+1.3
1,225,289	+		IAI47_05995	0.52	-1.9
1,225,289	+		IAI47_05995	0.52	+1.9
1,225,289	+		IAI47_05995	0.52	+1.2
1,225,289	+		IAI47_05995	0.52	-1.1
1,225,289	+		IAI47_05995	0.52	+0.1
1,225,290	-		IAI47_05995	0.52	-1.6
1,225,290	-		IAI47_05995	0.52	+0.4
1,225,290	-		IAI47_05995	0.52	+0.2
1,225,294	+		IAI47_05995	0.53	+1.8
1,225,294	+		IAI47_05995	0.53	-0.4
1,225,294	+		IAI47_05995	0.53	+0.6
1,225,294	+		IAI47_05995	0.53	-1.6
1,225,294	+		IAI47_05995	0.53	-3.3
1,225,295	-		IAI47_05995	0.53	-0.8
1,225,295	-		IAI47_05995	0.53	-2.1
1,225,295	-		IAI47_05995	0.53	-1.5
1,225,295	-		IAI47_05995	0.53	-1.2
1,225,295	-		IAI47_05995	0.53	+0.4
1,225,295	-		IAI47_05995	0.53	-0.8
1,225,295	-		IAI47_05995	0.53	+0.4
1,225,362	+		IAI47_05995	0.59	+1.5
1,225,389	+		IAI47_05995	0.61	-0.4
1,225,390	-		IAI47_05995	0.62	-0.1
1,225,390	-		IAI47_05995	0.62	+3.2
1,225,390	-		IAI47_05995	0.62	+0.8
1,225,390	-		IAI47_05995	0.62	-0.1
1,225,390	-		IAI47_05995	0.62	-2.3
1,225,390	-		IAI47_05995	0.62	+0.3
1,225,393	+		IAI47_05995	0.62	+0.7
1,225,393	+		IAI47_05995	0.62	+1.8
1,225,393	+		IAI47_05995	0.62	-0.1
1,225,393	+		IAI47_05995	0.62	+1.3
1,225,393	+		IAI47_05995	0.62	+0.5
1,225,393	+		IAI47_05995	0.62	-0.9
1,225,393	+		IAI47_05995	0.62	+0.8
1,225,394	-		IAI47_05995	0.62	+0.2
1,225,394	-		IAI47_05995	0.62	-2.5
1,225,394	-		IAI47_05995	0.62	+0.6
1,225,394	-		IAI47_05995	0.62	+1.0
1,225,394	-		IAI47_05995	0.62	-1.5
1,225,394	-		IAI47_05995	0.62	+1.4
1,225,394	-		IAI47_05995	0.62	-1.8
1,225,394	-		IAI47_05995	0.62	+1.0
1,225,415	+		IAI47_05995	0.64	-3.1
1,225,415	+		IAI47_05995	0.64	-1.5
1,225,415	+		IAI47_05995	0.64	+1.2
1,225,485	+		IAI47_05995	0.70	-2.7
1,225,485	+		IAI47_05995	0.70	-0.6
1,225,485	+		IAI47_05995	0.70	-0.5
1,225,485	+		IAI47_05995	0.70	+0.4
1,225,485	+		IAI47_05995	0.70	+1.1
1,225,485	+		IAI47_05995	0.70	-0.9
1,225,486	-		IAI47_05995	0.71	+0.3
1,225,486	-		IAI47_05995	0.71	-2.3
1,225,486	-		IAI47_05995	0.71	+2.1
1,225,489	-		IAI47_05995	0.71	+3.1
1,225,489	-		IAI47_05995	0.71	-0.8
1,225,517	+		IAI47_05995	0.73	+0.7
1,225,517	+		IAI47_05995	0.73	-1.2
1,225,517	+		IAI47_05995	0.73	-1.3
1,225,517	+		IAI47_05995	0.73	-2.2
1,225,518	-		IAI47_05995	0.74	+2.0
1,225,518	-		IAI47_05995	0.74	-1.2
1,225,590	-		IAI47_05995	0.80	-2.1
1,225,669	+		IAI47_05995	0.88	-2.8
1,225,669	+		IAI47_05995	0.88	+0.5
1,225,669	+		IAI47_05995	0.88	+1.5
1,225,669	+		IAI47_05995	0.88	-1.2
1,225,669	+		IAI47_05995	0.88	-0.5
1,225,669	+		IAI47_05995	0.88	-0.7
1,225,670	-		IAI47_05995	0.88	-0.8
1,225,670	-		IAI47_05995	0.88	-0.1
1,225,670	-		IAI47_05995	0.88	+0.8
1,225,670	-		IAI47_05995	0.88	+1.2
1,225,670	-		IAI47_05995	0.88	-0.8
1,225,670	-		IAI47_05995	0.88	+0.9
1,225,670	-		IAI47_05995	0.88	+0.6
1,225,670	-		IAI47_05995	0.88	-0.7
1,225,670	-		IAI47_05995	0.88	+3.7
1,225,670	-		IAI47_05995	0.88	-0.4
1,225,670	-		IAI47_05995	0.88	-1.8
1,225,671	+		IAI47_05995	0.88	+1.7
1,225,671	+		IAI47_05995	0.88	+1.1
1,225,671	+		IAI47_05995	0.88	-0.3
1,225,672	-		IAI47_05995	0.88	+0.5
1,225,672	-		IAI47_05995	0.88	-1.0
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