Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04290 and IAI47_04295 are separated by 105 nucleotides IAI47_04295 and IAI47_04300 are separated by 95 nucleotides
IAI47_04290: IAI47_04290 - trans-aconitate 2-methyltransferase, at 904,170 to 904,946
_04290
IAI47_04295: IAI47_04295 - nicotinamide-nucleotide amidase, at 905,052 to 905,546
_04295
IAI47_04300: IAI47_04300 - recombinase RecA, at 905,642 to 906,712
_04300
Position (kb) 905
906 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 904.133 kb on + strand at 904.134 kb on - strand at 904.134 kb on - strand at 904.134 kb on - strand at 904.150 kb on + strand at 904.150 kb on + strand at 904.150 kb on + strand at 904.194 kb on + strand at 904.194 kb on + strand at 904.195 kb on - strand at 904.199 kb on + strand at 904.199 kb on + strand at 904.199 kb on + strand at 904.200 kb on - strand at 904.247 kb on + strand at 904.247 kb on + strand at 904.247 kb on + strand at 904.248 kb on - strand, within IAI47_04290 at 904.248 kb on - strand, within IAI47_04290 at 904.250 kb on + strand, within IAI47_04290 at 904.250 kb on + strand, within IAI47_04290 at 904.250 kb on + strand, within IAI47_04290 at 904.250 kb on + strand, within IAI47_04290 at 904.250 kb on + strand, within IAI47_04290 at 904.273 kb on + strand, within IAI47_04290 at 904.274 kb on - strand, within IAI47_04290 at 904.304 kb on + strand, within IAI47_04290 at 904.322 kb on + strand, within IAI47_04290 at 904.372 kb on + strand, within IAI47_04290 at 904.372 kb on + strand, within IAI47_04290 at 904.373 kb on - strand, within IAI47_04290 at 904.373 kb on - strand, within IAI47_04290 at 904.373 kb on - strand, within IAI47_04290 at 904.373 kb on - strand, within IAI47_04290 at 904.373 kb on - strand, within IAI47_04290 at 904.457 kb on + strand, within IAI47_04290 at 904.457 kb on + strand, within IAI47_04290 at 904.457 kb on + strand, within IAI47_04290 at 904.458 kb on - strand, within IAI47_04290 at 904.458 kb on - strand, within IAI47_04290 at 904.458 kb on - strand, within IAI47_04290 at 904.461 kb on + strand, within IAI47_04290 at 904.461 kb on + strand, within IAI47_04290 at 904.462 kb on - strand, within IAI47_04290 at 904.462 kb on - strand, within IAI47_04290 at 904.462 kb on - strand, within IAI47_04290 at 904.462 kb on - strand, within IAI47_04290 at 904.462 kb on - strand, within IAI47_04290 at 904.462 kb on - strand, within IAI47_04290 at 904.462 kb on - strand, within IAI47_04290 at 904.462 kb on - strand, within IAI47_04290 at 904.566 kb on - strand, within IAI47_04290 at 904.571 kb on + strand, within IAI47_04290 at 904.571 kb on + strand, within IAI47_04290 at 904.571 kb on + strand, within IAI47_04290 at 904.571 kb on + strand, within IAI47_04290 at 904.572 kb on - strand, within IAI47_04290 at 904.572 kb on - strand, within IAI47_04290 at 904.572 kb on - strand, within IAI47_04290 at 904.572 kb on - strand, within IAI47_04290 at 904.572 kb on - strand, within IAI47_04290 at 904.572 kb on - strand, within IAI47_04290 at 904.655 kb on + strand, within IAI47_04290 at 904.655 kb on + strand, within IAI47_04290 at 904.655 kb on + strand, within IAI47_04290 at 904.655 kb on + strand, within IAI47_04290 at 904.655 kb on + strand, within IAI47_04290 at 904.656 kb on - strand, within IAI47_04290 at 904.656 kb on - strand, within IAI47_04290 at 904.656 kb on - strand, within IAI47_04290 at 904.680 kb on + strand, within IAI47_04290 at 904.683 kb on + strand, within IAI47_04290 at 904.683 kb on + strand, within IAI47_04290 at 904.683 kb on + strand, within IAI47_04290 at 904.684 kb on - strand, within IAI47_04290 at 904.684 kb on - strand, within IAI47_04290 at 904.684 kb on - strand, within IAI47_04290 at 904.718 kb on + strand, within IAI47_04290 at 904.718 kb on + strand, within IAI47_04290 at 904.719 kb on - strand, within IAI47_04290 at 904.728 kb on - strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.735 kb on - strand, within IAI47_04290 at 904.735 kb on - strand, within IAI47_04290 at 904.735 kb on - strand, within IAI47_04290 at 904.735 kb on - strand, within IAI47_04290 at 904.735 kb on - strand, within IAI47_04290 at 904.737 kb on + strand, within IAI47_04290 at 904.737 kb on + strand, within IAI47_04290 at 904.737 kb on + strand, within IAI47_04290 at 904.737 kb on + strand, within IAI47_04290 at 904.737 kb on + strand, within IAI47_04290 at 904.737 kb on + strand, within IAI47_04290 at 904.738 kb on - strand, within IAI47_04290 at 904.738 kb on - strand, within IAI47_04290 at 904.744 kb on + strand, within IAI47_04290 at 904.744 kb on + strand, within IAI47_04290 at 904.744 kb on + strand, within IAI47_04290 at 904.745 kb on - strand, within IAI47_04290 at 904.745 kb on - strand, within IAI47_04290 at 904.767 kb on - strand, within IAI47_04290 at 904.792 kb on + strand, within IAI47_04290 at 904.792 kb on + strand, within IAI47_04290 at 904.793 kb on - strand, within IAI47_04290 at 904.793 kb on - strand, within IAI47_04290 at 904.848 kb on + strand, within IAI47_04290 at 904.849 kb on - strand, within IAI47_04290 at 904.866 kb on - strand, within IAI47_04290 at 904.944 kb on + strand at 904.944 kb on + strand at 904.944 kb on + strand at 904.945 kb on - strand at 904.945 kb on - strand at 904.945 kb on - strand at 904.945 kb on - strand at 904.945 kb on - strand at 904.945 kb on - strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.949 kb on - strand at 904.949 kb on - strand at 904.949 kb on - strand at 904.949 kb on - strand at 904.949 kb on - strand at 904.949 kb on - strand at 904.949 kb on - strand at 904.949 kb on - strand at 905.051 kb on - strand at 905.051 kb on - strand at 905.051 kb on - strand at 905.078 kb on + strand at 905.078 kb on + strand at 905.079 kb on - strand at 905.089 kb on + strand at 905.089 kb on + strand at 905.089 kb on + strand at 905.089 kb on + strand at 905.089 kb on + strand at 905.089 kb on + strand at 905.089 kb on + strand at 905.089 kb on + strand at 905.090 kb on - strand at 905.090 kb on - strand at 905.090 kb on - strand at 905.123 kb on - strand, within IAI47_04295 at 905.160 kb on - strand, within IAI47_04295 at 905.160 kb on - strand, within IAI47_04295 at 905.174 kb on + strand, within IAI47_04295 at 905.175 kb on - strand, within IAI47_04295 at 905.175 kb on - strand, within IAI47_04295 at 905.175 kb on - strand, within IAI47_04295 at 905.217 kb on + strand, within IAI47_04295 at 905.217 kb on + strand, within IAI47_04295 at 905.218 kb on - strand, within IAI47_04295 at 905.218 kb on - strand, within IAI47_04295 at 905.218 kb on - strand, within IAI47_04295 at 905.218 kb on - strand, within IAI47_04295 at 905.218 kb on - strand, within IAI47_04295 at 905.275 kb on - strand, within IAI47_04295 at 905.275 kb on - strand, within IAI47_04295 at 905.343 kb on + strand, within IAI47_04295 at 905.344 kb on - strand, within IAI47_04295 at 905.406 kb on - strand, within IAI47_04295 at 905.465 kb on + strand, within IAI47_04295 at 905.465 kb on + strand, within IAI47_04295 at 905.466 kb on - strand, within IAI47_04295 at 905.512 kb on + strand at 905.512 kb on + strand at 905.512 kb on + strand at 905.512 kb on + strand at 905.513 kb on - strand at 905.513 kb on - strand at 905.513 kb on - strand at 905.513 kb on - strand at 905.523 kb on + strand at 905.523 kb on + strand at 905.523 kb on + strand at 905.553 kb on + strand at 905.566 kb on + strand at 905.566 kb on + strand at 905.595 kb on + strand at 905.595 kb on + strand at 905.595 kb on + strand at 905.618 kb on + strand at 905.631 kb on + strand at 905.631 kb on + strand at 905.631 kb on + strand at 905.632 kb on - strand at 905.674 kb on - strand at 905.768 kb on - strand, within IAI47_04300 at 905.825 kb on - strand, within IAI47_04300 at 905.837 kb on + strand, within IAI47_04300 at 905.837 kb on + strand, within IAI47_04300 at 905.921 kb on - strand, within IAI47_04300 at 905.970 kb on + strand, within IAI47_04300 at 906.097 kb on + strand, within IAI47_04300 at 906.151 kb on + strand, within IAI47_04300 at 906.151 kb on + strand, within IAI47_04300 at 906.151 kb on + strand, within IAI47_04300 at 906.152 kb on - strand, within IAI47_04300 at 906.152 kb on - strand, within IAI47_04300 at 906.152 kb on - strand, within IAI47_04300 at 906.152 kb on - strand, within IAI47_04300 at 906.152 kb on - strand, within IAI47_04300 at 906.199 kb on + strand, within IAI47_04300 at 906.199 kb on + strand, within IAI47_04300 at 906.200 kb on - strand, within IAI47_04300 at 906.232 kb on + strand, within IAI47_04300 at 906.233 kb on - strand, within IAI47_04300 at 906.233 kb on - strand, within IAI47_04300 at 906.296 kb on + strand, within IAI47_04300 at 906.297 kb on - strand, within IAI47_04300 at 906.349 kb on + strand, within IAI47_04300 at 906.434 kb on + strand, within IAI47_04300 at 906.434 kb on + strand, within IAI47_04300 at 906.434 kb on + strand, within IAI47_04300 at 906.434 kb on + strand, within IAI47_04300 at 906.434 kb on + strand, within IAI47_04300 at 906.434 kb on + strand, within IAI47_04300 at 906.435 kb on - strand, within IAI47_04300 at 906.435 kb on - strand, within IAI47_04300 at 906.435 kb on - strand, within IAI47_04300 at 906.435 kb on - strand, within IAI47_04300 at 906.435 kb on - strand, within IAI47_04300 at 906.435 kb on - strand, within IAI47_04300 at 906.445 kb on + strand, within IAI47_04300 at 906.446 kb on - strand, within IAI47_04300 at 906.451 kb on + strand, within IAI47_04300 at 906.451 kb on + strand, within IAI47_04300 at 906.451 kb on + strand, within IAI47_04300 at 906.515 kb on + strand, within IAI47_04300 at 906.521 kb on + strand, within IAI47_04300 at 906.521 kb on + strand, within IAI47_04300 at 906.521 kb on + strand, within IAI47_04300 at 906.521 kb on + strand, within IAI47_04300 at 906.521 kb on + strand, within IAI47_04300 at 906.522 kb on - strand, within IAI47_04300 at 906.522 kb on - strand, within IAI47_04300 at 906.522 kb on - strand, within IAI47_04300 at 906.522 kb on - strand, within IAI47_04300
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 904,133 + -1.8 904,134 - -1.0 904,134 - -1.0 904,134 - -0.5 904,150 + +1.2 904,150 + +1.1 904,150 + +0.6 904,194 + +0.5 904,194 + -2.6 904,195 - -1.9 904,199 + -0.3 904,199 + +0.3 904,199 + +0.1 904,200 - -0.4 904,247 + +1.3 904,247 + -1.0 904,247 + +1.6 904,248 - IAI47_04290 0.10 -2.9 904,248 - IAI47_04290 0.10 +1.6 904,250 + IAI47_04290 0.10 +0.2 904,250 + IAI47_04290 0.10 +0.2 904,250 + IAI47_04290 0.10 -3.4 904,250 + IAI47_04290 0.10 +0.6 904,250 + IAI47_04290 0.10 -0.7 904,273 + IAI47_04290 0.13 -0.9 904,274 - IAI47_04290 0.13 -0.8 904,304 + IAI47_04290 0.17 -0.7 904,322 + IAI47_04290 0.20 -2.4 904,372 + IAI47_04290 0.26 +0.6 904,372 + IAI47_04290 0.26 -1.4 904,373 - IAI47_04290 0.26 -3.2 904,373 - IAI47_04290 0.26 -1.6 904,373 - IAI47_04290 0.26 -0.8 904,373 - IAI47_04290 0.26 -0.3 904,373 - IAI47_04290 0.26 -0.0 904,457 + IAI47_04290 0.37 +0.2 904,457 + IAI47_04290 0.37 -0.9 904,457 + IAI47_04290 0.37 -1.8 904,458 - IAI47_04290 0.37 +0.2 904,458 - IAI47_04290 0.37 +0.8 904,458 - IAI47_04290 0.37 +1.6 904,461 + IAI47_04290 0.37 -2.4 904,461 + IAI47_04290 0.37 +3.0 904,462 - IAI47_04290 0.38 +0.1 904,462 - IAI47_04290 0.38 +1.3 904,462 - IAI47_04290 0.38 -2.9 904,462 - IAI47_04290 0.38 +3.9 904,462 - IAI47_04290 0.38 +1.0 904,462 - IAI47_04290 0.38 -0.8 904,462 - IAI47_04290 0.38 +0.6 904,462 - IAI47_04290 0.38 +0.2 904,566 - IAI47_04290 0.51 +0.3 904,571 + IAI47_04290 0.52 -0.8 904,571 + IAI47_04290 0.52 -0.0 904,571 + IAI47_04290 0.52 -1.9 904,571 + IAI47_04290 0.52 +1.8 904,572 - IAI47_04290 0.52 +1.3 904,572 - IAI47_04290 0.52 -0.2 904,572 - IAI47_04290 0.52 +0.2 904,572 - IAI47_04290 0.52 -1.2 904,572 - IAI47_04290 0.52 +1.3 904,572 - IAI47_04290 0.52 +0.9 904,655 + IAI47_04290 0.62 -0.9 904,655 + IAI47_04290 0.62 -1.0 904,655 + IAI47_04290 0.62 -0.6 904,655 + IAI47_04290 0.62 -0.1 904,655 + IAI47_04290 0.62 +0.3 904,656 - IAI47_04290 0.63 -1.1 904,656 - IAI47_04290 0.63 -1.0 904,656 - IAI47_04290 0.63 -0.2 904,680 + IAI47_04290 0.66 +1.2 904,683 + IAI47_04290 0.66 +1.6 904,683 + IAI47_04290 0.66 +0.6 904,683 + IAI47_04290 0.66 -1.9 904,684 - IAI47_04290 0.66 -0.7 904,684 - IAI47_04290 0.66 -0.0 904,684 - IAI47_04290 0.66 +2.0 904,718 + IAI47_04290 0.71 +0.5 904,718 + IAI47_04290 0.71 +1.9 904,719 - IAI47_04290 0.71 -1.2 904,728 - IAI47_04290 0.72 -0.2 904,734 + IAI47_04290 0.73 -0.5 904,734 + IAI47_04290 0.73 +2.0 904,734 + IAI47_04290 0.73 +2.5 904,734 + IAI47_04290 0.73 +0.0 904,734 + IAI47_04290 0.73 -0.1 904,734 + IAI47_04290 0.73 +0.5 904,734 + IAI47_04290 0.73 +0.6 904,734 + IAI47_04290 0.73 +0.2 904,734 + IAI47_04290 0.73 -0.2 904,735 - IAI47_04290 0.73 -3.3 904,735 - IAI47_04290 0.73 +0.5 904,735 - IAI47_04290 0.73 -1.2 904,735 - IAI47_04290 0.73 +1.0 904,735 - IAI47_04290 0.73 +3.7 904,737 + IAI47_04290 0.73 +0.7 904,737 + IAI47_04290 0.73 -0.3 904,737 + IAI47_04290 0.73 -0.4 904,737 + IAI47_04290 0.73 -1.2 904,737 + IAI47_04290 0.73 -2.7 904,737 + IAI47_04290 0.73 +2.0 904,738 - IAI47_04290 0.73 +1.3 904,738 - IAI47_04290 0.73 +1.2 904,744 + IAI47_04290 0.74 +0.6 904,744 + IAI47_04290 0.74 +0.7 904,744 + IAI47_04290 0.74 +0.7 904,745 - IAI47_04290 0.74 +0.3 904,745 - IAI47_04290 0.74 +0.8 904,767 - IAI47_04290 0.77 -1.0 904,792 + IAI47_04290 0.80 -0.4 904,792 + IAI47_04290 0.80 -0.2 904,793 - IAI47_04290 0.80 +0.9 904,793 - IAI47_04290 0.80 -2.4 904,848 + IAI47_04290 0.87 -2.2 904,849 - IAI47_04290 0.87 +2.9 904,866 - IAI47_04290 0.90 -0.4 904,944 + -0.6 904,944 + +2.2 904,944 + -0.0 904,945 - +0.2 904,945 - -2.8 904,945 - -1.0 904,945 - +0.1 904,945 - +2.2 904,945 - +1.0 904,948 + -0.3 904,948 + -0.2 904,948 + +0.9 904,948 + +5.0 904,948 + -0.8 904,948 + -0.3 904,948 + -0.2 904,948 + +1.0 904,948 + -1.3 904,948 + +1.4 904,948 + +0.5 904,949 - +0.0 904,949 - -0.1 904,949 - +2.3 904,949 - -0.3 904,949 - -1.2 904,949 - -2.2 904,949 - +1.1 904,949 - -0.6 905,051 - +1.5 905,051 - +0.6 905,051 - +0.3 905,078 + -1.5 905,078 + -0.8 905,079 - -0.8 905,089 + +0.7 905,089 + +0.3 905,089 + +0.1 905,089 + -1.0 905,089 + +2.2 905,089 + -0.5 905,089 + -0.9 905,089 + +0.3 905,090 - +0.5 905,090 - +0.0 905,090 - +0.3 905,123 - IAI47_04295 0.14 -0.8 905,160 - IAI47_04295 0.22 -0.2 905,160 - IAI47_04295 0.22 -0.8 905,174 + IAI47_04295 0.25 -1.9 905,175 - IAI47_04295 0.25 +3.3 905,175 - IAI47_04295 0.25 +0.6 905,175 - IAI47_04295 0.25 -1.0 905,217 + IAI47_04295 0.33 +0.9 905,217 + IAI47_04295 0.33 +2.5 905,218 - IAI47_04295 0.34 +2.6 905,218 - IAI47_04295 0.34 +0.2 905,218 - IAI47_04295 0.34 +0.5 905,218 - IAI47_04295 0.34 +1.7 905,218 - IAI47_04295 0.34 +0.6 905,275 - IAI47_04295 0.45 -0.1 905,275 - IAI47_04295 0.45 +0.9 905,343 + IAI47_04295 0.59 +0.6 905,344 - IAI47_04295 0.59 -0.2 905,406 - IAI47_04295 0.72 -1.3 905,465 + IAI47_04295 0.83 -1.8 905,465 + IAI47_04295 0.83 -0.4 905,466 - IAI47_04295 0.84 +0.5 905,512 + +2.1 905,512 + -1.6 905,512 + -2.0 905,512 + +0.1 905,513 - -0.4 905,513 - +0.4 905,513 - +0.8 905,513 - -0.7 905,523 + -2.1 905,523 + -1.2 905,523 + -0.6 905,553 + +1.1 905,566 + -1.1 905,566 + -1.4 905,595 + -2.1 905,595 + -2.3 905,595 + -1.6 905,618 + -1.2 905,631 + +0.7 905,631 + -3.0 905,631 + -1.6 905,632 - -2.1 905,674 - -0.0 905,768 - IAI47_04300 0.12 -1.2 905,825 - IAI47_04300 0.17 -0.6 905,837 + IAI47_04300 0.18 -2.0 905,837 + IAI47_04300 0.18 -1.0 905,921 - IAI47_04300 0.26 -2.7 905,970 + IAI47_04300 0.31 -0.4 906,097 + IAI47_04300 0.42 -2.3 906,151 + IAI47_04300 0.48 -0.4 906,151 + IAI47_04300 0.48 -0.0 906,151 + IAI47_04300 0.48 -0.8 906,152 - IAI47_04300 0.48 -1.0 906,152 - IAI47_04300 0.48 -2.4 906,152 - IAI47_04300 0.48 +1.6 906,152 - IAI47_04300 0.48 +0.6 906,152 - IAI47_04300 0.48 +0.2 906,199 + IAI47_04300 0.52 -0.8 906,199 + IAI47_04300 0.52 -1.4 906,200 - IAI47_04300 0.52 -0.2 906,232 + IAI47_04300 0.55 -1.4 906,233 - IAI47_04300 0.55 -1.4 906,233 - IAI47_04300 0.55 -0.8 906,296 + IAI47_04300 0.61 -0.4 906,297 - IAI47_04300 0.61 -3.5 906,349 + IAI47_04300 0.66 -0.0 906,434 + IAI47_04300 0.74 +0.2 906,434 + IAI47_04300 0.74 +0.6 906,434 + IAI47_04300 0.74 -1.0 906,434 + IAI47_04300 0.74 -3.2 906,434 + IAI47_04300 0.74 -2.0 906,434 + IAI47_04300 0.74 -0.8 906,435 - IAI47_04300 0.74 -2.7 906,435 - IAI47_04300 0.74 -0.0 906,435 - IAI47_04300 0.74 -2.5 906,435 - IAI47_04300 0.74 -2.7 906,435 - IAI47_04300 0.74 -2.3 906,435 - IAI47_04300 0.74 -0.4 906,445 + IAI47_04300 0.75 -1.6 906,446 - IAI47_04300 0.75 -1.2 906,451 + IAI47_04300 0.76 +0.2 906,451 + IAI47_04300 0.76 -0.4 906,451 + IAI47_04300 0.76 +0.6 906,515 + IAI47_04300 0.82 -1.8 906,521 + IAI47_04300 0.82 -2.0 906,521 + IAI47_04300 0.82 -0.4 906,521 + IAI47_04300 0.82 -0.4 906,521 + IAI47_04300 0.82 -0.1 906,521 + IAI47_04300 0.82 -1.0 906,522 - IAI47_04300 0.82 -1.6 906,522 - IAI47_04300 0.82 -0.4 906,522 - IAI47_04300 0.82 -1.8 906,522 - IAI47_04300 0.82 -3.4
Or see this region's nucleotide sequence