Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4223

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4221 and Ga0059261_4222 overlap by 4 nucleotidesGa0059261_4222 and Ga0059261_4223 are separated by 85 nucleotidesGa0059261_4223 and Ga0059261_4224 are separated by 3 nucleotidesGa0059261_4224 and Ga0059261_4225 are separated by 96 nucleotidesGa0059261_4225 and Ga0059261_4226 overlap by 38 nucleotides Ga0059261_4221: Ga0059261_4221 - Transcriptional regulators, at 4,374,690 to 4,375,172 _4221 Ga0059261_4222: Ga0059261_4222 - Enoyl-CoA hydratase/carnithine racemase, at 4,375,169 to 4,375,933 _4222 Ga0059261_4223: Ga0059261_4223 - 3-isopropylmalate dehydratase, large subunit, at 4,376,019 to 4,377,455 _4223 Ga0059261_4224: Ga0059261_4224 - hypothetical protein, at 4,377,459 to 4,377,599 _4224 Ga0059261_4225: Ga0059261_4225 - 3-isopropylmalate dehydratase, small subunit, at 4,377,696 to 4,378,325 _4225 Ga0059261_4226: Ga0059261_4226 - NADPH:quinone reductase and related Zn-dependent oxidoreductases, at 4,378,288 to 4,379,289 _4226 Position (kb) 4376 4377 4378Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 4375.262 kb on + strand, within Ga0059261_4222at 4375.262 kb on + strand, within Ga0059261_4222at 4375.262 kb on + strand, within Ga0059261_4222at 4375.262 kb on + strand, within Ga0059261_4222at 4375.262 kb on + strand, within Ga0059261_4222at 4375.263 kb on - strand, within Ga0059261_4222at 4375.263 kb on - strand, within Ga0059261_4222at 4375.263 kb on - strand, within Ga0059261_4222at 4375.263 kb on - strand, within Ga0059261_4222at 4375.263 kb on - strand, within Ga0059261_4222at 4375.285 kb on - strand, within Ga0059261_4222at 4375.479 kb on + strand, within Ga0059261_4222at 4375.489 kb on + strand, within Ga0059261_4222at 4375.514 kb on + strand, within Ga0059261_4222at 4375.514 kb on + strand, within Ga0059261_4222at 4375.514 kb on + strand, within Ga0059261_4222at 4375.515 kb on - strand, within Ga0059261_4222at 4375.515 kb on - strand, within Ga0059261_4222at 4375.515 kb on - strand, within Ga0059261_4222at 4375.515 kb on - strand, within Ga0059261_4222at 4375.515 kb on - strand, within Ga0059261_4222at 4375.857 kb on + strandat 4375.857 kb on + strandat 4375.857 kb on + strandat 4375.858 kb on - strandat 4375.858 kb on - strandat 4375.858 kb on - strandat 4376.004 kb on + strandat 4376.004 kb on + strandat 4376.004 kb on + strandat 4376.005 kb on - strandat 4376.005 kb on - strandat 4376.043 kb on + strandat 4376.103 kb on + strandat 4376.103 kb on + strandat 4376.103 kb on + strandat 4376.103 kb on + strandat 4376.103 kb on + strandat 4376.103 kb on + strandat 4376.103 kb on + strandat 4376.103 kb on + strandat 4376.103 kb on + strandat 4376.103 kb on + strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.104 kb on - strandat 4376.106 kb on - strandat 4376.106 kb on - strandat 4376.195 kb on + strand, within Ga0059261_4223at 4376.195 kb on + strand, within Ga0059261_4223at 4376.195 kb on + strandat 4376.195 kb on + strand, within Ga0059261_4223at 4376.196 kb on - strand, within Ga0059261_4223at 4376.196 kb on - strand, within Ga0059261_4223at 4376.196 kb on - strand, within Ga0059261_4223at 4376.196 kb on - strand, within Ga0059261_4223at 4376.196 kb on - strand, within Ga0059261_4223at 4376.196 kb on - strand, within Ga0059261_4223at 4376.216 kb on + strand, within Ga0059261_4223at 4376.216 kb on + strand, within Ga0059261_4223at 4376.217 kb on - strand, within Ga0059261_4223at 4376.217 kb on - strand, within Ga0059261_4223at 4376.334 kb on + strand, within Ga0059261_4223at 4376.334 kb on + strand, within Ga0059261_4223at 4376.335 kb on - strand, within Ga0059261_4223at 4376.521 kb on + strand, within Ga0059261_4223at 4376.522 kb on - strand, within Ga0059261_4223at 4376.522 kb on - strand, within Ga0059261_4223at 4376.522 kb on - strand, within Ga0059261_4223at 4376.522 kb on - strand, within Ga0059261_4223at 4376.522 kb on - strand, within Ga0059261_4223at 4376.640 kb on + strand, within Ga0059261_4223at 4376.641 kb on - strandat 4376.641 kb on - strand, within Ga0059261_4223at 4376.652 kb on + strand, within Ga0059261_4223at 4376.652 kb on + strand, within Ga0059261_4223at 4376.652 kb on + strand, within Ga0059261_4223at 4376.652 kb on + strand, within Ga0059261_4223at 4376.652 kb on + strand, within Ga0059261_4223at 4376.653 kb on - strand, within Ga0059261_4223at 4376.653 kb on - strand, within Ga0059261_4223at 4376.655 kb on - strand, within Ga0059261_4223at 4376.770 kb on - strand, within Ga0059261_4223at 4376.862 kb on + strand, within Ga0059261_4223at 4376.862 kb on + strand, within Ga0059261_4223at 4376.862 kb on + strand, within Ga0059261_4223at 4376.863 kb on - strand, within Ga0059261_4223at 4376.863 kb on - strand, within Ga0059261_4223at 4377.018 kb on + strand, within Ga0059261_4223at 4377.018 kb on + strand, within Ga0059261_4223at 4377.018 kb on + strand, within Ga0059261_4223at 4377.018 kb on + strand, within Ga0059261_4223at 4377.018 kb on + strand, within Ga0059261_4223at 4377.018 kb on + strand, within Ga0059261_4223at 4377.018 kb on + strand, within Ga0059261_4223at 4377.018 kb on + strand, within Ga0059261_4223at 4377.018 kb on + strand, within Ga0059261_4223at 4377.019 kb on - strand, within Ga0059261_4223at 4377.019 kb on - strand, within Ga0059261_4223at 4377.019 kb on - strand, within Ga0059261_4223at 4377.019 kb on - strand, within Ga0059261_4223at 4377.019 kb on - strand, within Ga0059261_4223at 4377.020 kb on + strand, within Ga0059261_4223at 4377.020 kb on + strand, within Ga0059261_4223at 4377.021 kb on - strand, within Ga0059261_4223at 4377.021 kb on - strand, within Ga0059261_4223at 4377.021 kb on - strand, within Ga0059261_4223at 4377.021 kb on - strand, within Ga0059261_4223at 4377.021 kb on - strand, within Ga0059261_4223at 4377.021 kb on - strand, within Ga0059261_4223at 4377.021 kb on - strand, within Ga0059261_4223at 4377.021 kb on - strand, within Ga0059261_4223at 4377.347 kb on - strandat 4377.445 kb on + strandat 4377.445 kb on + strandat 4377.445 kb on + strandat 4377.446 kb on - strandat 4377.446 kb on - strandat 4377.446 kb on - strandat 4377.446 kb on - strandat 4377.446 kb on - strandat 4377.519 kb on + strand, within Ga0059261_4224at 4377.519 kb on + strand, within Ga0059261_4224at 4377.519 kb on + strand, within Ga0059261_4224at 4377.662 kb on - strandat 4377.750 kb on - strandat 4377.750 kb on - strandat 4377.870 kb on + strand, within Ga0059261_4225at 4377.920 kb on + strand, within Ga0059261_4225at 4377.984 kb on + strand, within Ga0059261_4225at 4377.984 kb on + strand, within Ga0059261_4225at 4377.984 kb on + strand, within Ga0059261_4225at 4377.985 kb on - strand, within Ga0059261_4225at 4377.985 kb on - strand, within Ga0059261_4225at 4378.129 kb on - strand, within Ga0059261_4225at 4378.409 kb on - strand, within Ga0059261_4226at 4378.409 kb on - strand, within Ga0059261_4226at 4378.434 kb on + strand, within Ga0059261_4226at 4378.434 kb on + strand, within Ga0059261_4226at 4378.435 kb on - strand, within Ga0059261_4226at 4378.435 kb on - strand, within Ga0059261_4226at 4378.438 kb on + strand, within Ga0059261_4226at 4378.438 kb on + strand, within Ga0059261_4226at 4378.439 kb on - strand, within Ga0059261_4226at 4378.439 kb on - strand, within Ga0059261_4226at 4378.439 kb on - strand, within Ga0059261_4226

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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4,375,262 + Ga0059261_4222 0.12 +0.5
4,375,262 + Ga0059261_4222 0.12 +0.0
4,375,262 + Ga0059261_4222 0.12 -0.1
4,375,262 + Ga0059261_4222 0.12 -0.2
4,375,262 + Ga0059261_4222 0.12 -0.6
4,375,263 - Ga0059261_4222 0.12 -0.5
4,375,263 - Ga0059261_4222 0.12 -0.8
4,375,263 - Ga0059261_4222 0.12 +0.6
4,375,263 - Ga0059261_4222 0.12 +0.5
4,375,263 - Ga0059261_4222 0.12 -1.3
4,375,285 - Ga0059261_4222 0.15 -0.1
4,375,479 + Ga0059261_4222 0.41 -0.5
4,375,489 + Ga0059261_4222 0.42 -0.2
4,375,514 + Ga0059261_4222 0.45 +1.0
4,375,514 + Ga0059261_4222 0.45 +0.7
4,375,514 + Ga0059261_4222 0.45 -0.7
4,375,515 - Ga0059261_4222 0.45 +0.5
4,375,515 - Ga0059261_4222 0.45 -0.5
4,375,515 - Ga0059261_4222 0.45 +0.6
4,375,515 - Ga0059261_4222 0.45 +0.0
4,375,515 - Ga0059261_4222 0.45 +0.9
4,375,857 + -0.5
4,375,857 + -0.1
4,375,857 + -0.0
4,375,858 - -0.5
4,375,858 - +0.4
4,375,858 - -1.0
4,376,004 + -1.5
4,376,004 + -3.2
4,376,004 + -3.9
4,376,005 - -3.9
4,376,005 - -3.0
4,376,043 + -2.1
4,376,103 + -3.8
4,376,103 + -2.5
4,376,103 + -3.0
4,376,103 + -1.5
4,376,103 + -3.7
4,376,103 + -3.7
4,376,103 + -4.5
4,376,103 + -2.7
4,376,103 + -2.7
4,376,103 + -4.0
4,376,104 - -3.4
4,376,104 - -4.7
4,376,104 - -3.3
4,376,104 - -2.3
4,376,104 - -3.8
4,376,104 - -4.5
4,376,104 - -0.4
4,376,104 - -3.5
4,376,104 - -4.0
4,376,104 - -4.3
4,376,104 - -2.9
4,376,104 - -4.3
4,376,104 - -2.8
4,376,106 - -1.0
4,376,106 - -4.3
4,376,195 + Ga0059261_4223 0.12 -2.3
4,376,195 + Ga0059261_4223 0.12 -3.1
4,376,195 + +0.0
4,376,195 + Ga0059261_4223 0.12 -3.8
4,376,196 - Ga0059261_4223 0.12 -4.1
4,376,196 - Ga0059261_4223 0.12 -4.0
4,376,196 - Ga0059261_4223 0.12 -1.8
4,376,196 - Ga0059261_4223 0.12 -4.4
4,376,196 - Ga0059261_4223 0.12 -3.4
4,376,196 - Ga0059261_4223 0.12 -4.1
4,376,216 + Ga0059261_4223 0.14 -2.2
4,376,216 + Ga0059261_4223 0.14 -1.5
4,376,217 - Ga0059261_4223 0.14 -2.7
4,376,217 - Ga0059261_4223 0.14 -2.0
4,376,334 + Ga0059261_4223 0.22 -3.1
4,376,334 + Ga0059261_4223 0.22 -2.3
4,376,335 - Ga0059261_4223 0.22 -1.1
4,376,521 + Ga0059261_4223 0.35 -2.7
4,376,522 - Ga0059261_4223 0.35 -3.0
4,376,522 - Ga0059261_4223 0.35 -3.3
4,376,522 - Ga0059261_4223 0.35 -4.6
4,376,522 - Ga0059261_4223 0.35 -5.2
4,376,522 - Ga0059261_4223 0.35 -5.6
4,376,640 + Ga0059261_4223 0.43 -4.7
4,376,641 - -0.5
4,376,641 - Ga0059261_4223 0.43 -3.5
4,376,652 + Ga0059261_4223 0.44 -3.5
4,376,652 + Ga0059261_4223 0.44 -4.7
4,376,652 + Ga0059261_4223 0.44 -2.0
4,376,652 + Ga0059261_4223 0.44 -3.3
4,376,652 + Ga0059261_4223 0.44 -3.0
4,376,653 - Ga0059261_4223 0.44 -2.1
4,376,653 - Ga0059261_4223 0.44 -3.9
4,376,655 - Ga0059261_4223 0.44 -4.8
4,376,770 - Ga0059261_4223 0.52 -3.0
4,376,862 + Ga0059261_4223 0.59 -3.7
4,376,862 + Ga0059261_4223 0.59 -4.0
4,376,862 + Ga0059261_4223 0.59 -2.8
4,376,863 - Ga0059261_4223 0.59 -5.0
4,376,863 - Ga0059261_4223 0.59 -3.5
4,377,018 + Ga0059261_4223 0.70 -2.9
4,377,018 + Ga0059261_4223 0.70 -3.2
4,377,018 + Ga0059261_4223 0.70 -3.7
4,377,018 + Ga0059261_4223 0.70 -1.8
4,377,018 + Ga0059261_4223 0.70 -4.1
4,377,018 + Ga0059261_4223 0.70 -3.1
4,377,018 + Ga0059261_4223 0.70 -2.3
4,377,018 + Ga0059261_4223 0.70 -3.1
4,377,018 + Ga0059261_4223 0.70 -2.0
4,377,019 - Ga0059261_4223 0.70 -1.5
4,377,019 - Ga0059261_4223 0.70 -2.9
4,377,019 - Ga0059261_4223 0.70 -2.9
4,377,019 - Ga0059261_4223 0.70 -3.3
4,377,019 - Ga0059261_4223 0.70 -3.3
4,377,020 + Ga0059261_4223 0.70 -2.1
4,377,020 + Ga0059261_4223 0.70 -5.3
4,377,021 - Ga0059261_4223 0.70 -3.3
4,377,021 - Ga0059261_4223 0.70 -3.1
4,377,021 - Ga0059261_4223 0.70 -2.4
4,377,021 - Ga0059261_4223 0.70 -4.0
4,377,021 - Ga0059261_4223 0.70 -3.2
4,377,021 - Ga0059261_4223 0.70 -3.5
4,377,021 - Ga0059261_4223 0.70 -3.3
4,377,021 - Ga0059261_4223 0.70 -1.8
4,377,347 - -0.4
4,377,445 + -1.5
4,377,445 + +0.4
4,377,445 + -0.4
4,377,446 - -3.5
4,377,446 - -1.5
4,377,446 - -2.4
4,377,446 - -3.9
4,377,446 - -1.0
4,377,519 + Ga0059261_4224 0.43 -2.0
4,377,519 + Ga0059261_4224 0.43 -2.5
4,377,519 + Ga0059261_4224 0.43 -2.7
4,377,662 - -4.3
4,377,750 - -1.0
4,377,750 - -2.4
4,377,870 + Ga0059261_4225 0.28 -3.9
4,377,920 + Ga0059261_4225 0.36 -3.7
4,377,984 + Ga0059261_4225 0.46 -3.3
4,377,984 + Ga0059261_4225 0.46 -4.1
4,377,984 + Ga0059261_4225 0.46 -4.8
4,377,985 - Ga0059261_4225 0.46 -3.8
4,377,985 - Ga0059261_4225 0.46 -2.7
4,378,129 - Ga0059261_4225 0.69 -2.8
4,378,409 - Ga0059261_4226 0.12 +0.2
4,378,409 - Ga0059261_4226 0.12 -1.3
4,378,434 + Ga0059261_4226 0.15 -0.2
4,378,434 + Ga0059261_4226 0.15 -0.9
4,378,435 - Ga0059261_4226 0.15 -0.8
4,378,435 - Ga0059261_4226 0.15 -0.3
4,378,438 + Ga0059261_4226 0.15 +0.2
4,378,438 + Ga0059261_4226 0.15 +0.3
4,378,439 - Ga0059261_4226 0.15 +0.1
4,378,439 - Ga0059261_4226 0.15 -0.3
4,378,439 - Ga0059261_4226 0.15 -0.4

Or see this region's nucleotide sequence