Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3937

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3935 and Ga0059261_3936 overlap by 4 nucleotidesGa0059261_3936 and Ga0059261_3937 are separated by 124 nucleotidesGa0059261_3937 and Ga0059261_3938 overlap by 4 nucleotides Ga0059261_3935: Ga0059261_3935 - hypothetical protein, at 4,050,747 to 4,051,943 _3935 Ga0059261_3936: Ga0059261_3936 - hypothetical protein, at 4,051,940 to 4,052,611 _3936 Ga0059261_3937: Ga0059261_3937 - Imidazolonepropionase and related amidohydrolases, at 4,052,736 to 4,054,160 _3937 Ga0059261_3938: Ga0059261_3938 - Imidazolonepropionase and related amidohydrolases, at 4,054,157 to 4,055,461 _3938 Position (kb) 4052 4053 4054 4055Strain fitness (log2 ratio) -1 0 1 2 3at 4051.832 kb on + strandat 4052.180 kb on + strand, within Ga0059261_3936at 4052.180 kb on + strand, within Ga0059261_3936at 4052.181 kb on - strand, within Ga0059261_3936at 4052.387 kb on + strand, within Ga0059261_3936at 4052.387 kb on + strand, within Ga0059261_3936at 4052.387 kb on + strand, within Ga0059261_3936at 4052.387 kb on + strand, within Ga0059261_3936at 4052.387 kb on + strand, within Ga0059261_3936at 4052.387 kb on + strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.388 kb on - strand, within Ga0059261_3936at 4052.391 kb on + strand, within Ga0059261_3936at 4052.391 kb on + strandat 4052.391 kb on + strand, within Ga0059261_3936at 4052.392 kb on - strand, within Ga0059261_3936at 4052.392 kb on - strand, within Ga0059261_3936at 4052.392 kb on - strand, within Ga0059261_3936at 4052.392 kb on - strand, within Ga0059261_3936at 4052.676 kb on - strandat 4052.676 kb on - strandat 4052.730 kb on + strandat 4052.730 kb on + strandat 4052.731 kb on - strandat 4052.731 kb on - strandat 4052.731 kb on - strandat 4052.880 kb on + strand, within Ga0059261_3937at 4052.892 kb on + strandat 4052.892 kb on + strand, within Ga0059261_3937at 4052.892 kb on + strand, within Ga0059261_3937at 4052.892 kb on + strand, within Ga0059261_3937at 4052.893 kb on - strand, within Ga0059261_3937at 4052.893 kb on - strand, within Ga0059261_3937at 4052.893 kb on - strand, within Ga0059261_3937at 4052.893 kb on - strand, within Ga0059261_3937at 4052.893 kb on - strand, within Ga0059261_3937at 4053.063 kb on + strand, within Ga0059261_3937at 4053.064 kb on - strand, within Ga0059261_3937at 4053.108 kb on + strand, within Ga0059261_3937at 4053.188 kb on + strand, within Ga0059261_3937at 4053.188 kb on + strand, within Ga0059261_3937at 4053.188 kb on + strand, within Ga0059261_3937at 4053.189 kb on - strand, within Ga0059261_3937at 4053.189 kb on - strand, within Ga0059261_3937at 4053.189 kb on - strand, within Ga0059261_3937at 4053.189 kb on - strand, within Ga0059261_3937at 4053.189 kb on - strand, within Ga0059261_3937at 4053.189 kb on - strand, within Ga0059261_3937at 4053.189 kb on - strand, within Ga0059261_3937at 4053.312 kb on + strand, within Ga0059261_3937at 4053.312 kb on + strand, within Ga0059261_3937at 4053.313 kb on - strand, within Ga0059261_3937at 4053.313 kb on - strand, within Ga0059261_3937at 4053.396 kb on + strand, within Ga0059261_3937at 4053.396 kb on + strand, within Ga0059261_3937at 4053.397 kb on - strand, within Ga0059261_3937at 4053.438 kb on - strand, within Ga0059261_3937at 4053.478 kb on - strand, within Ga0059261_3937at 4053.478 kb on - strand, within Ga0059261_3937at 4053.478 kb on - strandat 4053.478 kb on - strand, within Ga0059261_3937at 4053.478 kb on - strand, within Ga0059261_3937at 4053.498 kb on + strand, within Ga0059261_3937at 4053.498 kb on + strand, within Ga0059261_3937at 4053.498 kb on + strandat 4053.498 kb on + strand, within Ga0059261_3937at 4053.498 kb on + strand, within Ga0059261_3937at 4053.498 kb on + strand, within Ga0059261_3937at 4053.498 kb on + strand, within Ga0059261_3937at 4053.498 kb on + strand, within Ga0059261_3937at 4053.498 kb on + strand, within Ga0059261_3937at 4053.499 kb on - strand, within Ga0059261_3937at 4053.499 kb on - strand, within Ga0059261_3937at 4053.499 kb on - strandat 4053.499 kb on - strand, within Ga0059261_3937at 4053.499 kb on - strand, within Ga0059261_3937at 4053.545 kb on + strand, within Ga0059261_3937at 4053.545 kb on + strand, within Ga0059261_3937at 4053.595 kb on - strand, within Ga0059261_3937at 4053.627 kb on - strand, within Ga0059261_3937at 4053.645 kb on + strand, within Ga0059261_3937at 4053.646 kb on - strand, within Ga0059261_3937at 4053.681 kb on + strand, within Ga0059261_3937at 4053.681 kb on + strand, within Ga0059261_3937at 4053.681 kb on + strand, within Ga0059261_3937at 4053.682 kb on - strand, within Ga0059261_3937at 4053.682 kb on - strand, within Ga0059261_3937at 4053.682 kb on - strand, within Ga0059261_3937at 4053.682 kb on - strand, within Ga0059261_3937at 4053.682 kb on - strand, within Ga0059261_3937at 4053.682 kb on - strand, within Ga0059261_3937at 4053.682 kb on - strand, within Ga0059261_3937at 4053.683 kb on + strandat 4053.683 kb on + strand, within Ga0059261_3937at 4053.683 kb on + strand, within Ga0059261_3937at 4053.683 kb on + strand, within Ga0059261_3937at 4053.683 kb on + strand, within Ga0059261_3937at 4053.683 kb on + strand, within Ga0059261_3937at 4053.684 kb on - strand, within Ga0059261_3937at 4053.684 kb on - strand, within Ga0059261_3937at 4053.684 kb on - strand, within Ga0059261_3937at 4053.684 kb on - strand, within Ga0059261_3937at 4053.684 kb on - strand, within Ga0059261_3937at 4053.762 kb on + strand, within Ga0059261_3937at 4053.762 kb on + strand, within Ga0059261_3937at 4053.762 kb on + strand, within Ga0059261_3937at 4053.762 kb on + strandat 4053.762 kb on + strand, within Ga0059261_3937at 4053.762 kb on + strand, within Ga0059261_3937at 4053.763 kb on - strand, within Ga0059261_3937at 4053.986 kb on + strandat 4053.987 kb on - strand, within Ga0059261_3937at 4054.041 kb on + strandat 4054.042 kb on - strandat 4054.042 kb on - strandat 4054.083 kb on + strandat 4054.083 kb on + strandat 4054.083 kb on + strandat 4054.083 kb on + strandat 4054.083 kb on + strandat 4054.084 kb on - strandat 4054.084 kb on - strandat 4054.084 kb on - strandat 4054.084 kb on - strandat 4054.084 kb on - strandat 4054.084 kb on - strandat 4054.174 kb on + strandat 4054.175 kb on - strandat 4054.175 kb on - strandat 4054.175 kb on - strandat 4054.175 kb on - strandat 4054.175 kb on - strandat 4054.293 kb on + strandat 4054.294 kb on - strand, within Ga0059261_3938at 4054.388 kb on - strand, within Ga0059261_3938at 4054.463 kb on - strand, within Ga0059261_3938at 4054.463 kb on - strand, within Ga0059261_3938at 4054.495 kb on - strandat 4054.525 kb on + strand, within Ga0059261_3938at 4054.525 kb on + strand, within Ga0059261_3938at 4054.627 kb on + strand, within Ga0059261_3938at 4054.670 kb on + strand, within Ga0059261_3938at 4054.670 kb on + strand, within Ga0059261_3938at 4054.670 kb on + strand, within Ga0059261_3938at 4054.671 kb on - strand, within Ga0059261_3938at 4054.671 kb on - strand, within Ga0059261_3938at 4054.718 kb on + strand, within Ga0059261_3938at 4054.718 kb on + strand, within Ga0059261_3938at 4054.718 kb on + strand, within Ga0059261_3938at 4054.718 kb on + strand, within Ga0059261_3938at 4054.718 kb on + strand, within Ga0059261_3938at 4054.719 kb on - strand, within Ga0059261_3938at 4054.719 kb on - strand, within Ga0059261_3938at 4054.719 kb on - strand, within Ga0059261_3938at 4054.719 kb on - strand, within Ga0059261_3938at 4054.719 kb on - strand, within Ga0059261_3938at 4054.757 kb on + strand, within Ga0059261_3938at 4054.758 kb on - strand, within Ga0059261_3938at 4054.990 kb on + strand, within Ga0059261_3938at 4054.990 kb on + strand, within Ga0059261_3938at 4054.991 kb on - strand, within Ga0059261_3938at 4055.145 kb on + strand, within Ga0059261_3938at 4055.146 kb on - strand, within Ga0059261_3938at 4055.153 kb on + strand, within Ga0059261_3938at 4055.153 kb on + strand, within Ga0059261_3938at 4055.153 kb on + strand, within Ga0059261_3938at 4055.153 kb on + strand, within Ga0059261_3938at 4055.153 kb on + strand, within Ga0059261_3938at 4055.153 kb on + strand, within Ga0059261_3938at 4055.154 kb on - strand, within Ga0059261_3938at 4055.154 kb on - strand, within Ga0059261_3938

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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4,051,832 + +0.9
4,052,180 + Ga0059261_3936 0.36 +1.1
4,052,180 + Ga0059261_3936 0.36 -0.3
4,052,181 - Ga0059261_3936 0.36 +0.4
4,052,387 + Ga0059261_3936 0.67 -0.2
4,052,387 + Ga0059261_3936 0.67 -0.9
4,052,387 + Ga0059261_3936 0.67 +0.4
4,052,387 + Ga0059261_3936 0.67 -0.2
4,052,387 + Ga0059261_3936 0.67 +0.9
4,052,387 + Ga0059261_3936 0.67 +0.0
4,052,388 - Ga0059261_3936 0.67 +0.6
4,052,388 - Ga0059261_3936 0.67 -0.1
4,052,388 - Ga0059261_3936 0.67 +0.1
4,052,388 - Ga0059261_3936 0.67 +0.5
4,052,388 - Ga0059261_3936 0.67 -0.3
4,052,388 - Ga0059261_3936 0.67 +0.5
4,052,388 - Ga0059261_3936 0.67 +0.5
4,052,388 - Ga0059261_3936 0.67 +1.6
4,052,388 - Ga0059261_3936 0.67 -0.5
4,052,391 + Ga0059261_3936 0.67 -0.1
4,052,391 + -0.5
4,052,391 + Ga0059261_3936 0.67 -0.4
4,052,392 - Ga0059261_3936 0.67 +0.1
4,052,392 - Ga0059261_3936 0.67 -0.1
4,052,392 - Ga0059261_3936 0.67 +0.7
4,052,392 - Ga0059261_3936 0.67 +0.3
4,052,676 - -0.3
4,052,676 - +0.5
4,052,730 + +0.8
4,052,730 + -0.3
4,052,731 - +1.1
4,052,731 - +1.1
4,052,731 - +0.5
4,052,880 + Ga0059261_3937 0.10 +2.5
4,052,892 + +3.6
4,052,892 + Ga0059261_3937 0.11 +0.8
4,052,892 + Ga0059261_3937 0.11 +1.3
4,052,892 + Ga0059261_3937 0.11 +1.5
4,052,893 - Ga0059261_3937 0.11 +1.1
4,052,893 - Ga0059261_3937 0.11 -0.9
4,052,893 - Ga0059261_3937 0.11 +0.7
4,052,893 - Ga0059261_3937 0.11 -0.4
4,052,893 - Ga0059261_3937 0.11 +0.1
4,053,063 + Ga0059261_3937 0.23 +0.5
4,053,064 - Ga0059261_3937 0.23 -0.9
4,053,108 + Ga0059261_3937 0.26 +1.1
4,053,188 + Ga0059261_3937 0.32 -0.0
4,053,188 + Ga0059261_3937 0.32 +0.8
4,053,188 + Ga0059261_3937 0.32 +0.6
4,053,189 - Ga0059261_3937 0.32 +1.6
4,053,189 - Ga0059261_3937 0.32 +0.1
4,053,189 - Ga0059261_3937 0.32 +2.1
4,053,189 - Ga0059261_3937 0.32 +1.1
4,053,189 - Ga0059261_3937 0.32 +0.6
4,053,189 - Ga0059261_3937 0.32 +0.7
4,053,189 - Ga0059261_3937 0.32 -0.7
4,053,312 + Ga0059261_3937 0.40 +0.5
4,053,312 + Ga0059261_3937 0.40 +0.2
4,053,313 - Ga0059261_3937 0.40 +1.0
4,053,313 - Ga0059261_3937 0.40 +1.9
4,053,396 + Ga0059261_3937 0.46 +0.1
4,053,396 + Ga0059261_3937 0.46 +1.8
4,053,397 - Ga0059261_3937 0.46 +1.1
4,053,438 - Ga0059261_3937 0.49 +1.3
4,053,478 - Ga0059261_3937 0.52 +0.1
4,053,478 - Ga0059261_3937 0.52 +1.6
4,053,478 - +1.5
4,053,478 - Ga0059261_3937 0.52 +0.9
4,053,478 - Ga0059261_3937 0.52 +1.9
4,053,498 + Ga0059261_3937 0.53 +1.2
4,053,498 + Ga0059261_3937 0.53 +0.7
4,053,498 + +2.1
4,053,498 + Ga0059261_3937 0.53 +0.2
4,053,498 + Ga0059261_3937 0.53 +0.6
4,053,498 + Ga0059261_3937 0.53 +1.2
4,053,498 + Ga0059261_3937 0.53 +0.7
4,053,498 + Ga0059261_3937 0.53 +0.3
4,053,498 + Ga0059261_3937 0.53 +0.9
4,053,499 - Ga0059261_3937 0.54 +0.9
4,053,499 - Ga0059261_3937 0.54 +1.2
4,053,499 - +2.1
4,053,499 - Ga0059261_3937 0.54 +1.1
4,053,499 - Ga0059261_3937 0.54 +1.0
4,053,545 + Ga0059261_3937 0.57 +0.7
4,053,545 + Ga0059261_3937 0.57 -0.4
4,053,595 - Ga0059261_3937 0.60 -0.7
4,053,627 - Ga0059261_3937 0.63 +1.1
4,053,645 + Ga0059261_3937 0.64 +1.1
4,053,646 - Ga0059261_3937 0.64 +0.3
4,053,681 + Ga0059261_3937 0.66 +0.7
4,053,681 + Ga0059261_3937 0.66 +0.3
4,053,681 + Ga0059261_3937 0.66 +1.1
4,053,682 - Ga0059261_3937 0.66 +0.5
4,053,682 - Ga0059261_3937 0.66 +0.6
4,053,682 - Ga0059261_3937 0.66 +0.9
4,053,682 - Ga0059261_3937 0.66 +0.9
4,053,682 - Ga0059261_3937 0.66 +1.6
4,053,682 - Ga0059261_3937 0.66 +0.4
4,053,682 - Ga0059261_3937 0.66 +0.1
4,053,683 + -0.5
4,053,683 + Ga0059261_3937 0.66 +0.7
4,053,683 + Ga0059261_3937 0.66 +1.1
4,053,683 + Ga0059261_3937 0.66 +0.5
4,053,683 + Ga0059261_3937 0.66 +0.1
4,053,683 + Ga0059261_3937 0.66 +0.4
4,053,684 - Ga0059261_3937 0.67 +0.6
4,053,684 - Ga0059261_3937 0.67 +1.2
4,053,684 - Ga0059261_3937 0.67 +0.2
4,053,684 - Ga0059261_3937 0.67 +1.1
4,053,684 - Ga0059261_3937 0.67 +1.1
4,053,762 + Ga0059261_3937 0.72 +0.3
4,053,762 + Ga0059261_3937 0.72 +1.2
4,053,762 + Ga0059261_3937 0.72 +1.1
4,053,762 + -0.9
4,053,762 + Ga0059261_3937 0.72 +1.4
4,053,762 + Ga0059261_3937 0.72 +0.9
4,053,763 - Ga0059261_3937 0.72 +0.7
4,053,986 + +0.6
4,053,987 - Ga0059261_3937 0.88 +1.1
4,054,041 + +0.9
4,054,042 - +0.1
4,054,042 - +0.8
4,054,083 + +0.3
4,054,083 + +0.5
4,054,083 + +1.6
4,054,083 + +2.3
4,054,083 + +0.5
4,054,084 - +0.9
4,054,084 - +1.3
4,054,084 - +0.7
4,054,084 - +1.3
4,054,084 - +1.1
4,054,084 - +1.1
4,054,174 + +1.1
4,054,175 - +0.7
4,054,175 - +1.1
4,054,175 - +0.6
4,054,175 - +1.3
4,054,175 - +0.3
4,054,293 + -0.9
4,054,294 - Ga0059261_3938 0.10 +0.6
4,054,388 - Ga0059261_3938 0.18 +1.6
4,054,463 - Ga0059261_3938 0.23 +0.5
4,054,463 - Ga0059261_3938 0.23 +0.7
4,054,495 - +1.1
4,054,525 + Ga0059261_3938 0.28 +1.4
4,054,525 + Ga0059261_3938 0.28 +0.5
4,054,627 + Ga0059261_3938 0.36 +0.7
4,054,670 + Ga0059261_3938 0.39 -0.7
4,054,670 + Ga0059261_3938 0.39 +1.1
4,054,670 + Ga0059261_3938 0.39 +1.8
4,054,671 - Ga0059261_3938 0.39 +0.5
4,054,671 - Ga0059261_3938 0.39 +1.3
4,054,718 + Ga0059261_3938 0.43 -0.5
4,054,718 + Ga0059261_3938 0.43 -0.4
4,054,718 + Ga0059261_3938 0.43 +0.6
4,054,718 + Ga0059261_3938 0.43 +1.1
4,054,718 + Ga0059261_3938 0.43 +1.1
4,054,719 - Ga0059261_3938 0.43 +0.7
4,054,719 - Ga0059261_3938 0.43 +0.5
4,054,719 - Ga0059261_3938 0.43 +1.1
4,054,719 - Ga0059261_3938 0.43 +0.8
4,054,719 - Ga0059261_3938 0.43 +1.7
4,054,757 + Ga0059261_3938 0.46 +2.0
4,054,758 - Ga0059261_3938 0.46 -1.5
4,054,990 + Ga0059261_3938 0.64 +0.6
4,054,990 + Ga0059261_3938 0.64 +0.5
4,054,991 - Ga0059261_3938 0.64 +0.4
4,055,145 + Ga0059261_3938 0.76 +1.8
4,055,146 - Ga0059261_3938 0.76 +1.4
4,055,153 + Ga0059261_3938 0.76 +0.5
4,055,153 + Ga0059261_3938 0.76 -0.7
4,055,153 + Ga0059261_3938 0.76 +1.1
4,055,153 + Ga0059261_3938 0.76 +1.8
4,055,153 + Ga0059261_3938 0.76 +1.2
4,055,153 + Ga0059261_3938 0.76 +0.6
4,055,154 - Ga0059261_3938 0.76 +0.9
4,055,154 - Ga0059261_3938 0.76 +1.2

Or see this region's nucleotide sequence