Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1961

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1960 and Ga0059261_1961 are separated by 313 nucleotidesGa0059261_1961 and Ga0059261_1962 overlap by 8 nucleotidesGa0059261_1962 and Ga0059261_1963 are separated by 209 nucleotides Ga0059261_1960: Ga0059261_1960 - negative transcriptional regulator, PaiB family, at 2,066,426 to 2,067,049 _1960 Ga0059261_1961: Ga0059261_1961 - hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 2,067,363 to 2,068,142 _1961 Ga0059261_1962: Ga0059261_1962 - RNase HII (EC 3.1.26.4), at 2,068,135 to 2,068,758 _1962 Ga0059261_1963: Ga0059261_1963 - Isocitrate lyase, at 2,068,968 to 2,070,563 _1963 Position (kb) 2067 2068 2069Strain fitness (log2 ratio) -2 -1 0 1at 2066.378 kb on + strandat 2066.378 kb on + strandat 2066.378 kb on + strandat 2066.379 kb on - strandat 2066.379 kb on - strandat 2066.379 kb on - strandat 2066.392 kb on + strandat 2066.392 kb on + strandat 2066.394 kb on + strandat 2066.429 kb on + strandat 2066.429 kb on + strandat 2066.429 kb on + strandat 2066.429 kb on + strandat 2066.429 kb on + strandat 2066.429 kb on + strandat 2066.430 kb on - strandat 2066.430 kb on - strandat 2066.430 kb on - strandat 2066.430 kb on - strandat 2066.430 kb on - strandat 2066.430 kb on - strandat 2066.430 kb on - strandat 2066.675 kb on + strand, within Ga0059261_1960at 2066.675 kb on + strand, within Ga0059261_1960at 2066.675 kb on + strand, within Ga0059261_1960at 2066.675 kb on + strand, within Ga0059261_1960at 2066.675 kb on + strand, within Ga0059261_1960at 2066.675 kb on + strand, within Ga0059261_1960at 2066.675 kb on + strand, within Ga0059261_1960at 2066.675 kb on + strand, within Ga0059261_1960at 2066.675 kb on + strand, within Ga0059261_1960at 2066.676 kb on - strand, within Ga0059261_1960at 2066.676 kb on - strand, within Ga0059261_1960at 2066.676 kb on - strand, within Ga0059261_1960at 2066.676 kb on - strand, within Ga0059261_1960at 2066.676 kb on - strand, within Ga0059261_1960at 2066.676 kb on - strand, within Ga0059261_1960at 2066.676 kb on - strand, within Ga0059261_1960at 2066.693 kb on + strand, within Ga0059261_1960at 2066.694 kb on - strand, within Ga0059261_1960at 2066.715 kb on + strand, within Ga0059261_1960at 2066.738 kb on + strand, within Ga0059261_1960at 2066.738 kb on + strand, within Ga0059261_1960at 2066.738 kb on + strand, within Ga0059261_1960at 2066.738 kb on + strand, within Ga0059261_1960at 2066.738 kb on + strand, within Ga0059261_1960at 2066.738 kb on + strand, within Ga0059261_1960at 2066.738 kb on + strand, within Ga0059261_1960at 2066.738 kb on + strand, within Ga0059261_1960at 2066.738 kb on + strand, within Ga0059261_1960at 2066.739 kb on - strand, within Ga0059261_1960at 2066.739 kb on - strand, within Ga0059261_1960at 2066.739 kb on - strand, within Ga0059261_1960at 2066.739 kb on - strand, within Ga0059261_1960at 2066.739 kb on - strand, within Ga0059261_1960at 2066.739 kb on - strand, within Ga0059261_1960at 2066.876 kb on + strand, within Ga0059261_1960at 2066.876 kb on + strand, within Ga0059261_1960at 2066.876 kb on + strand, within Ga0059261_1960at 2066.876 kb on + strand, within Ga0059261_1960at 2066.876 kb on + strand, within Ga0059261_1960at 2066.876 kb on + strand, within Ga0059261_1960at 2066.876 kb on + strand, within Ga0059261_1960at 2066.876 kb on + strand, within Ga0059261_1960at 2066.877 kb on - strand, within Ga0059261_1960at 2066.877 kb on - strand, within Ga0059261_1960at 2066.877 kb on - strand, within Ga0059261_1960at 2066.877 kb on - strand, within Ga0059261_1960at 2066.877 kb on - strand, within Ga0059261_1960at 2067.047 kb on + strandat 2067.048 kb on - strandat 2067.048 kb on - strandat 2067.048 kb on - strandat 2067.266 kb on + strandat 2067.266 kb on + strandat 2067.266 kb on + strandat 2067.266 kb on + strandat 2067.266 kb on + strandat 2067.266 kb on + strandat 2067.266 kb on + strandat 2067.266 kb on + strandat 2067.267 kb on - strandat 2067.267 kb on - strandat 2067.267 kb on - strandat 2067.267 kb on - strandat 2067.267 kb on - strandat 2067.267 kb on - strandat 2067.267 kb on - strandat 2067.267 kb on - strandat 2067.267 kb on - strandat 2067.267 kb on - strandat 2067.267 kb on - strandat 2067.329 kb on + strandat 2067.329 kb on + strandat 2067.329 kb on + strandat 2067.329 kb on + strandat 2067.329 kb on + strandat 2067.330 kb on - strandat 2067.330 kb on - strandat 2067.330 kb on - strandat 2067.330 kb on - strandat 2067.330 kb on - strandat 2068.151 kb on - strandat 2068.151 kb on - strandat 2068.151 kb on - strandat 2068.612 kb on + strand, within Ga0059261_1962at 2068.612 kb on + strand, within Ga0059261_1962at 2068.613 kb on - strand, within Ga0059261_1962at 2068.637 kb on - strand, within Ga0059261_1962at 2068.898 kb on + strandat 2068.906 kb on + strandat 2068.906 kb on + strandat 2068.906 kb on + strandat 2068.906 kb on + strandat 2068.906 kb on + strandat 2068.907 kb on - strandat 2068.907 kb on - strandat 2068.969 kb on + strandat 2068.969 kb on + strandat 2068.969 kb on + strandat 2068.969 kb on + strandat 2068.969 kb on + strandat 2068.969 kb on + strandat 2068.969 kb on + strandat 2068.969 kb on + strandat 2068.970 kb on - strandat 2068.970 kb on - strandat 2068.970 kb on - strandat 2068.970 kb on - strandat 2068.970 kb on - strandat 2068.970 kb on - strandat 2068.970 kb on - strandat 2069.035 kb on + strandat 2069.035 kb on + strandat 2069.035 kb on + strandat 2069.035 kb on + strandat 2069.035 kb on + strandat 2069.035 kb on + strandat 2069.035 kb on + strandat 2069.035 kb on + strandat 2069.036 kb on - strandat 2069.036 kb on - strandat 2069.036 kb on - strandat 2069.036 kb on - strandat 2069.036 kb on - strandat 2069.072 kb on + strandat 2069.072 kb on + strandat 2069.072 kb on + strandat 2069.072 kb on + strandat 2069.072 kb on + strandat 2069.073 kb on - strandat 2069.073 kb on - strandat 2069.073 kb on - strandat 2069.073 kb on - strandat 2069.073 kb on - strandat 2069.073 kb on - strandat 2069.073 kb on - strandat 2069.073 kb on - strandat 2069.073 kb on - strandat 2069.134 kb on + strand, within Ga0059261_1963

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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2,066,378 + +0.0
2,066,378 + -0.6
2,066,378 + -0.1
2,066,379 - +0.5
2,066,379 - -0.2
2,066,379 - -0.2
2,066,392 + +0.6
2,066,392 + -0.4
2,066,394 + -1.0
2,066,429 + +0.1
2,066,429 + +0.2
2,066,429 + +0.2
2,066,429 + +0.2
2,066,429 + +1.3
2,066,429 + -1.2
2,066,430 - -1.2
2,066,430 - -0.2
2,066,430 - -0.7
2,066,430 - -0.2
2,066,430 - +0.3
2,066,430 - -0.4
2,066,430 - +0.6
2,066,675 + Ga0059261_1960 0.40 -0.2
2,066,675 + Ga0059261_1960 0.40 +0.7
2,066,675 + Ga0059261_1960 0.40 +0.3
2,066,675 + Ga0059261_1960 0.40 +0.0
2,066,675 + Ga0059261_1960 0.40 +0.8
2,066,675 + Ga0059261_1960 0.40 -1.3
2,066,675 + Ga0059261_1960 0.40 -0.2
2,066,675 + Ga0059261_1960 0.40 +0.2
2,066,675 + Ga0059261_1960 0.40 -2.1
2,066,676 - Ga0059261_1960 0.40 -0.6
2,066,676 - Ga0059261_1960 0.40 -0.1
2,066,676 - Ga0059261_1960 0.40 +0.6
2,066,676 - Ga0059261_1960 0.40 -0.4
2,066,676 - Ga0059261_1960 0.40 +0.8
2,066,676 - Ga0059261_1960 0.40 -0.5
2,066,676 - Ga0059261_1960 0.40 +0.1
2,066,693 + Ga0059261_1960 0.43 -0.3
2,066,694 - Ga0059261_1960 0.43 +0.4
2,066,715 + Ga0059261_1960 0.46 -0.1
2,066,738 + Ga0059261_1960 0.50 +0.1
2,066,738 + Ga0059261_1960 0.50 +0.1
2,066,738 + Ga0059261_1960 0.50 +0.0
2,066,738 + Ga0059261_1960 0.50 -0.4
2,066,738 + Ga0059261_1960 0.50 -0.3
2,066,738 + Ga0059261_1960 0.50 +0.8
2,066,738 + Ga0059261_1960 0.50 -0.2
2,066,738 + Ga0059261_1960 0.50 +1.7
2,066,738 + Ga0059261_1960 0.50 +0.0
2,066,739 - Ga0059261_1960 0.50 -0.5
2,066,739 - Ga0059261_1960 0.50 -0.3
2,066,739 - Ga0059261_1960 0.50 -0.9
2,066,739 - Ga0059261_1960 0.50 -0.6
2,066,739 - Ga0059261_1960 0.50 -0.7
2,066,739 - Ga0059261_1960 0.50 +0.3
2,066,876 + Ga0059261_1960 0.72 +0.3
2,066,876 + Ga0059261_1960 0.72 +0.3
2,066,876 + Ga0059261_1960 0.72 +0.6
2,066,876 + Ga0059261_1960 0.72 -0.0
2,066,876 + Ga0059261_1960 0.72 -0.7
2,066,876 + Ga0059261_1960 0.72 +0.3
2,066,876 + Ga0059261_1960 0.72 -0.7
2,066,876 + Ga0059261_1960 0.72 -0.8
2,066,877 - Ga0059261_1960 0.72 +0.1
2,066,877 - Ga0059261_1960 0.72 +0.4
2,066,877 - Ga0059261_1960 0.72 +1.1
2,066,877 - Ga0059261_1960 0.72 +0.9
2,066,877 - Ga0059261_1960 0.72 +0.4
2,067,047 + -1.2
2,067,048 - -0.4
2,067,048 - +0.6
2,067,048 - -0.1
2,067,266 + +0.2
2,067,266 + +0.0
2,067,266 + -1.6
2,067,266 + +0.5
2,067,266 + +0.9
2,067,266 + -0.5
2,067,266 + +0.8
2,067,266 + -0.0
2,067,267 - -1.7
2,067,267 - -0.1
2,067,267 - +0.6
2,067,267 - -0.7
2,067,267 - -0.9
2,067,267 - -0.6
2,067,267 - -2.0
2,067,267 - +0.5
2,067,267 - +0.1
2,067,267 - -0.2
2,067,267 - -0.7
2,067,329 + -1.0
2,067,329 + -1.4
2,067,329 + +0.7
2,067,329 + +1.4
2,067,329 + -0.2
2,067,330 - -0.4
2,067,330 - -0.1
2,067,330 - -0.6
2,067,330 - -0.8
2,067,330 - -0.4
2,068,151 - -0.7
2,068,151 - -0.9
2,068,151 - -0.6
2,068,612 + Ga0059261_1962 0.76 +0.0
2,068,612 + Ga0059261_1962 0.76 -0.8
2,068,613 - Ga0059261_1962 0.77 -0.6
2,068,637 - Ga0059261_1962 0.80 -0.1
2,068,898 + -0.7
2,068,906 + -1.0
2,068,906 + -0.2
2,068,906 + +1.3
2,068,906 + +1.3
2,068,906 + +0.3
2,068,907 - -0.2
2,068,907 - +0.2
2,068,969 + -1.5
2,068,969 + -0.9
2,068,969 + +0.9
2,068,969 + +0.8
2,068,969 + -1.4
2,068,969 + -0.2
2,068,969 + +0.4
2,068,969 + +0.3
2,068,970 - +0.6
2,068,970 - -0.7
2,068,970 - -0.4
2,068,970 - +0.7
2,068,970 - -0.7
2,068,970 - -0.6
2,068,970 - -0.1
2,069,035 + -0.7
2,069,035 + +0.3
2,069,035 + +0.5
2,069,035 + +0.1
2,069,035 + +0.0
2,069,035 + -0.3
2,069,035 + +0.5
2,069,035 + -0.3
2,069,036 - -0.3
2,069,036 - +0.3
2,069,036 - -0.3
2,069,036 - +0.1
2,069,036 - -1.1
2,069,072 + -0.1
2,069,072 + +1.2
2,069,072 + -0.6
2,069,072 + +0.5
2,069,072 + -0.2
2,069,073 - -1.5
2,069,073 - -0.8
2,069,073 - -0.0
2,069,073 - +1.0
2,069,073 - -0.1
2,069,073 - -0.4
2,069,073 - +1.0
2,069,073 - -0.1
2,069,073 - -0.1
2,069,134 + Ga0059261_1963 0.10 +0.0

Or see this region's nucleotide sequence