Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1933

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1932 and Ga0059261_1933 are separated by 211 nucleotidesGa0059261_1933 and Ga0059261_1934 overlap by 8 nucleotidesGa0059261_1934 and Ga0059261_1935 are separated by 103 nucleotides Ga0059261_1932: Ga0059261_1932 - Peptidase family M23, at 2,040,669 to 2,042,180 _1932 Ga0059261_1933: Ga0059261_1933 - Helicase conserved C-terminal domain, at 2,042,392 to 2,044,878 _1933 Ga0059261_1934: Ga0059261_1934 - Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog), at 2,044,871 to 2,045,170 _1934 Ga0059261_1935: Ga0059261_1935 - Ferredoxin, at 2,045,274 to 2,045,615 _1935 Position (kb) 2042 2043 2044 2045Strain fitness (log2 ratio) -2 -1 0 1 2at 2041.397 kb on + strand, within Ga0059261_1932at 2041.399 kb on + strand, within Ga0059261_1932at 2041.399 kb on + strand, within Ga0059261_1932at 2041.399 kb on + strand, within Ga0059261_1932at 2041.399 kb on + strand, within Ga0059261_1932at 2041.399 kb on + strand, within Ga0059261_1932at 2041.399 kb on + strand, within Ga0059261_1932at 2041.399 kb on + strand, within Ga0059261_1932at 2041.399 kb on + strand, within Ga0059261_1932at 2041.399 kb on + strand, within Ga0059261_1932at 2041.399 kb on + strand, within Ga0059261_1932at 2041.400 kb on - strand, within Ga0059261_1932at 2041.400 kb on - strand, within Ga0059261_1932at 2041.400 kb on - strand, within Ga0059261_1932at 2041.400 kb on - strand, within Ga0059261_1932at 2041.400 kb on - strand, within Ga0059261_1932at 2041.400 kb on - strand, within Ga0059261_1932at 2041.400 kb on - strand, within Ga0059261_1932at 2041.447 kb on + strand, within Ga0059261_1932at 2041.447 kb on + strand, within Ga0059261_1932at 2041.487 kb on + strand, within Ga0059261_1932at 2041.487 kb on + strand, within Ga0059261_1932at 2041.629 kb on - strand, within Ga0059261_1932at 2041.629 kb on - strand, within Ga0059261_1932at 2041.933 kb on + strand, within Ga0059261_1932at 2041.933 kb on + strand, within Ga0059261_1932at 2041.933 kb on + strand, within Ga0059261_1932at 2041.933 kb on + strand, within Ga0059261_1932at 2041.933 kb on + strand, within Ga0059261_1932at 2041.933 kb on + strand, within Ga0059261_1932at 2041.933 kb on + strand, within Ga0059261_1932at 2041.933 kb on + strand, within Ga0059261_1932at 2041.933 kb on + strand, within Ga0059261_1932at 2041.934 kb on - strand, within Ga0059261_1932at 2041.934 kb on - strand, within Ga0059261_1932at 2041.934 kb on - strand, within Ga0059261_1932at 2041.934 kb on - strand, within Ga0059261_1932at 2041.934 kb on - strand, within Ga0059261_1932at 2041.934 kb on - strand, within Ga0059261_1932at 2041.934 kb on - strand, within Ga0059261_1932at 2042.202 kb on + strandat 2042.203 kb on - strandat 2042.203 kb on - strandat 2042.203 kb on - strandat 2042.203 kb on - strandat 2042.203 kb on - strandat 2042.254 kb on + strandat 2042.266 kb on - strandat 2042.266 kb on - strandat 2042.266 kb on - strandat 2042.281 kb on + strandat 2042.287 kb on + strandat 2042.287 kb on + strandat 2042.287 kb on + strandat 2042.287 kb on + strandat 2042.287 kb on + strandat 2042.287 kb on + strandat 2042.288 kb on - strandat 2042.288 kb on - strandat 2042.288 kb on - strandat 2042.288 kb on - strandat 2042.288 kb on - strandat 2042.288 kb on - strandat 2042.391 kb on - strandat 2042.533 kb on + strandat 2042.533 kb on + strandat 2042.533 kb on + strandat 2042.533 kb on + strandat 2042.533 kb on + strandat 2042.533 kb on + strandat 2042.533 kb on + strandat 2042.533 kb on + strandat 2042.533 kb on + strandat 2042.534 kb on - strandat 2042.534 kb on - strandat 2042.534 kb on - strandat 2042.534 kb on - strandat 2042.534 kb on - strandat 2042.534 kb on - strandat 2042.534 kb on - strandat 2042.534 kb on - strandat 2042.534 kb on - strandat 2042.534 kb on - strandat 2042.854 kb on + strand, within Ga0059261_1933at 2042.854 kb on + strand, within Ga0059261_1933at 2042.854 kb on + strand, within Ga0059261_1933at 2042.854 kb on + strand, within Ga0059261_1933at 2042.854 kb on + strand, within Ga0059261_1933at 2042.854 kb on + strand, within Ga0059261_1933at 2042.854 kb on + strand, within Ga0059261_1933at 2042.854 kb on + strand, within Ga0059261_1933at 2042.854 kb on + strand, within Ga0059261_1933at 2042.854 kb on + strand, within Ga0059261_1933at 2042.855 kb on - strand, within Ga0059261_1933at 2042.855 kb on - strand, within Ga0059261_1933at 2042.855 kb on - strand, within Ga0059261_1933at 2042.855 kb on - strand, within Ga0059261_1933at 2042.855 kb on - strand, within Ga0059261_1933at 2042.855 kb on - strand, within Ga0059261_1933at 2042.855 kb on - strand, within Ga0059261_1933at 2042.855 kb on - strand, within Ga0059261_1933at 2042.855 kb on - strand, within Ga0059261_1933at 2042.926 kb on + strand, within Ga0059261_1933at 2042.926 kb on + strand, within Ga0059261_1933at 2042.926 kb on + strand, within Ga0059261_1933at 2042.927 kb on - strand, within Ga0059261_1933at 2042.927 kb on - strand, within Ga0059261_1933at 2042.927 kb on - strand, within Ga0059261_1933at 2042.927 kb on - strand, within Ga0059261_1933at 2042.927 kb on - strandat 2042.927 kb on - strand, within Ga0059261_1933at 2042.927 kb on - strand, within Ga0059261_1933at 2042.927 kb on - strand, within Ga0059261_1933at 2042.927 kb on - strand, within Ga0059261_1933at 2043.043 kb on + strand, within Ga0059261_1933at 2043.043 kb on + strand, within Ga0059261_1933at 2043.043 kb on + strand, within Ga0059261_1933at 2043.043 kb on + strand, within Ga0059261_1933at 2043.043 kb on + strand, within Ga0059261_1933at 2043.043 kb on + strand, within Ga0059261_1933at 2043.044 kb on - strand, within Ga0059261_1933at 2043.044 kb on - strand, within Ga0059261_1933at 2043.301 kb on + strand, within Ga0059261_1933at 2043.302 kb on - strand, within Ga0059261_1933at 2043.302 kb on - strand, within Ga0059261_1933at 2043.302 kb on - strand, within Ga0059261_1933at 2043.302 kb on - strand, within Ga0059261_1933at 2043.588 kb on + strand, within Ga0059261_1933at 2043.588 kb on + strand, within Ga0059261_1933at 2043.691 kb on + strand, within Ga0059261_1933at 2043.691 kb on + strand, within Ga0059261_1933at 2043.691 kb on + strand, within Ga0059261_1933at 2043.691 kb on + strand, within Ga0059261_1933at 2043.691 kb on + strand, within Ga0059261_1933at 2043.691 kb on + strand, within Ga0059261_1933at 2043.691 kb on + strand, within Ga0059261_1933at 2043.691 kb on + strand, within Ga0059261_1933at 2043.692 kb on - strand, within Ga0059261_1933at 2043.692 kb on - strandat 2043.692 kb on - strand, within Ga0059261_1933at 2043.692 kb on - strand, within Ga0059261_1933at 2043.692 kb on - strand, within Ga0059261_1933at 2043.692 kb on - strand, within Ga0059261_1933at 2043.692 kb on - strand, within Ga0059261_1933at 2043.692 kb on - strand, within Ga0059261_1933at 2043.694 kb on - strand, within Ga0059261_1933at 2043.824 kb on + strand, within Ga0059261_1933at 2043.825 kb on - strand, within Ga0059261_1933at 2043.825 kb on - strand, within Ga0059261_1933at 2043.825 kb on - strand, within Ga0059261_1933at 2045.059 kb on - strand, within Ga0059261_1934at 2045.117 kb on + strand, within Ga0059261_1934at 2045.117 kb on + strand, within Ga0059261_1934at 2045.117 kb on + strand, within Ga0059261_1934at 2045.118 kb on - strand, within Ga0059261_1934at 2045.118 kb on - strand, within Ga0059261_1934at 2045.118 kb on - strand, within Ga0059261_1934at 2045.176 kb on + strandat 2045.176 kb on + strandat 2045.719 kb on + strandat 2045.739 kb on + strandat 2045.868 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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2,041,397 + Ga0059261_1932 0.48 +0.6
2,041,399 + Ga0059261_1932 0.48 -0.4
2,041,399 + Ga0059261_1932 0.48 -0.1
2,041,399 + Ga0059261_1932 0.48 +0.2
2,041,399 + Ga0059261_1932 0.48 +2.0
2,041,399 + Ga0059261_1932 0.48 -0.1
2,041,399 + Ga0059261_1932 0.48 +0.6
2,041,399 + Ga0059261_1932 0.48 -0.1
2,041,399 + Ga0059261_1932 0.48 +0.2
2,041,399 + Ga0059261_1932 0.48 -0.3
2,041,399 + Ga0059261_1932 0.48 -0.1
2,041,400 - Ga0059261_1932 0.48 +0.4
2,041,400 - Ga0059261_1932 0.48 -0.1
2,041,400 - Ga0059261_1932 0.48 -0.1
2,041,400 - Ga0059261_1932 0.48 +0.1
2,041,400 - Ga0059261_1932 0.48 +0.8
2,041,400 - Ga0059261_1932 0.48 -1.2
2,041,400 - Ga0059261_1932 0.48 +0.5
2,041,447 + Ga0059261_1932 0.51 +0.5
2,041,447 + Ga0059261_1932 0.51 -0.2
2,041,487 + Ga0059261_1932 0.54 -0.4
2,041,487 + Ga0059261_1932 0.54 +0.6
2,041,629 - Ga0059261_1932 0.63 +1.0
2,041,629 - Ga0059261_1932 0.63 +0.1
2,041,933 + Ga0059261_1932 0.84 -0.0
2,041,933 + Ga0059261_1932 0.84 +0.2
2,041,933 + Ga0059261_1932 0.84 -1.3
2,041,933 + Ga0059261_1932 0.84 +0.0
2,041,933 + Ga0059261_1932 0.84 +1.1
2,041,933 + Ga0059261_1932 0.84 +0.2
2,041,933 + Ga0059261_1932 0.84 +1.4
2,041,933 + Ga0059261_1932 0.84 +0.9
2,041,933 + Ga0059261_1932 0.84 +1.2
2,041,934 - Ga0059261_1932 0.84 +0.8
2,041,934 - Ga0059261_1932 0.84 +0.0
2,041,934 - Ga0059261_1932 0.84 -0.2
2,041,934 - Ga0059261_1932 0.84 +0.1
2,041,934 - Ga0059261_1932 0.84 -0.6
2,041,934 - Ga0059261_1932 0.84 -0.7
2,041,934 - Ga0059261_1932 0.84 +0.5
2,042,202 + -1.8
2,042,203 - -0.2
2,042,203 - -0.6
2,042,203 - -0.2
2,042,203 - -0.8
2,042,203 - -1.3
2,042,254 + +0.9
2,042,266 - -0.4
2,042,266 - +1.1
2,042,266 - +0.6
2,042,281 + -0.2
2,042,287 + +0.4
2,042,287 + +0.6
2,042,287 + +0.6
2,042,287 + +0.7
2,042,287 + -0.8
2,042,287 + -0.3
2,042,288 - +0.0
2,042,288 - -2.1
2,042,288 - -1.0
2,042,288 - -1.1
2,042,288 - -0.7
2,042,288 - -0.2
2,042,391 - -0.6
2,042,533 + +1.9
2,042,533 + -1.1
2,042,533 + +0.0
2,042,533 + -0.5
2,042,533 + +0.0
2,042,533 + -0.3
2,042,533 + +0.4
2,042,533 + -1.6
2,042,533 + -0.5
2,042,534 - -0.8
2,042,534 - +2.4
2,042,534 - -0.6
2,042,534 - -0.1
2,042,534 - +0.5
2,042,534 - -0.1
2,042,534 - +0.5
2,042,534 - +0.1
2,042,534 - -0.5
2,042,534 - +0.8
2,042,854 + Ga0059261_1933 0.19 -0.2
2,042,854 + Ga0059261_1933 0.19 -0.4
2,042,854 + Ga0059261_1933 0.19 -0.2
2,042,854 + Ga0059261_1933 0.19 -0.3
2,042,854 + Ga0059261_1933 0.19 +0.4
2,042,854 + Ga0059261_1933 0.19 +0.2
2,042,854 + Ga0059261_1933 0.19 -0.0
2,042,854 + Ga0059261_1933 0.19 -0.4
2,042,854 + Ga0059261_1933 0.19 -0.8
2,042,854 + Ga0059261_1933 0.19 -0.3
2,042,855 - Ga0059261_1933 0.19 -1.1
2,042,855 - Ga0059261_1933 0.19 -0.0
2,042,855 - Ga0059261_1933 0.19 -0.0
2,042,855 - Ga0059261_1933 0.19 -1.4
2,042,855 - Ga0059261_1933 0.19 +0.9
2,042,855 - Ga0059261_1933 0.19 +0.2
2,042,855 - Ga0059261_1933 0.19 +0.4
2,042,855 - Ga0059261_1933 0.19 -1.0
2,042,855 - Ga0059261_1933 0.19 -0.6
2,042,926 + Ga0059261_1933 0.21 -0.6
2,042,926 + Ga0059261_1933 0.21 -1.6
2,042,926 + Ga0059261_1933 0.21 -0.3
2,042,927 - Ga0059261_1933 0.22 -1.1
2,042,927 - Ga0059261_1933 0.22 +1.4
2,042,927 - Ga0059261_1933 0.22 -0.4
2,042,927 - Ga0059261_1933 0.22 -0.2
2,042,927 - -0.2
2,042,927 - Ga0059261_1933 0.22 -0.3
2,042,927 - Ga0059261_1933 0.22 -0.8
2,042,927 - Ga0059261_1933 0.22 -2.1
2,042,927 - Ga0059261_1933 0.22 -0.3
2,043,043 + Ga0059261_1933 0.26 -0.6
2,043,043 + Ga0059261_1933 0.26 -0.6
2,043,043 + Ga0059261_1933 0.26 -1.0
2,043,043 + Ga0059261_1933 0.26 -0.8
2,043,043 + Ga0059261_1933 0.26 -2.0
2,043,043 + Ga0059261_1933 0.26 -0.1
2,043,044 - Ga0059261_1933 0.26 -2.1
2,043,044 - Ga0059261_1933 0.26 -0.8
2,043,301 + Ga0059261_1933 0.37 -0.4
2,043,302 - Ga0059261_1933 0.37 +0.0
2,043,302 - Ga0059261_1933 0.37 +0.4
2,043,302 - Ga0059261_1933 0.37 -0.4
2,043,302 - Ga0059261_1933 0.37 -0.5
2,043,588 + Ga0059261_1933 0.48 -0.4
2,043,588 + Ga0059261_1933 0.48 +0.1
2,043,691 + Ga0059261_1933 0.52 -0.3
2,043,691 + Ga0059261_1933 0.52 -1.8
2,043,691 + Ga0059261_1933 0.52 +0.2
2,043,691 + Ga0059261_1933 0.52 -1.1
2,043,691 + Ga0059261_1933 0.52 -0.5
2,043,691 + Ga0059261_1933 0.52 +0.0
2,043,691 + Ga0059261_1933 0.52 +0.2
2,043,691 + Ga0059261_1933 0.52 -0.5
2,043,692 - Ga0059261_1933 0.52 +0.0
2,043,692 - -0.2
2,043,692 - Ga0059261_1933 0.52 -0.4
2,043,692 - Ga0059261_1933 0.52 -0.1
2,043,692 - Ga0059261_1933 0.52 -0.6
2,043,692 - Ga0059261_1933 0.52 -0.4
2,043,692 - Ga0059261_1933 0.52 +0.2
2,043,692 - Ga0059261_1933 0.52 -1.4
2,043,694 - Ga0059261_1933 0.52 -0.8
2,043,824 + Ga0059261_1933 0.58 -0.9
2,043,825 - Ga0059261_1933 0.58 +0.1
2,043,825 - Ga0059261_1933 0.58 -0.1
2,043,825 - Ga0059261_1933 0.58 +0.1
2,045,059 - Ga0059261_1934 0.63 -0.7
2,045,117 + Ga0059261_1934 0.82 +0.3
2,045,117 + Ga0059261_1934 0.82 -0.5
2,045,117 + Ga0059261_1934 0.82 -1.0
2,045,118 - Ga0059261_1934 0.82 +0.7
2,045,118 - Ga0059261_1934 0.82 -0.5
2,045,118 - Ga0059261_1934 0.82 +0.7
2,045,176 + -2.1
2,045,176 + -0.2
2,045,719 + -0.1
2,045,739 + -0.5
2,045,868 + +0.9

Or see this region's nucleotide sequence