Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13290

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13280 and BWI76_RS13285 are separated by 172 nucleotidesBWI76_RS13285 and BWI76_RS13290 overlap by 4 nucleotidesBWI76_RS13290 and BWI76_RS13295 are separated by 239 nucleotides BWI76_RS13280: BWI76_RS13280 - LysR family transcriptional regulator, at 2,768,905 to 2,769,828 _RS13280 BWI76_RS13285: BWI76_RS13285 - protocatechuate 3,4-dioxygenase subunit alpha, at 2,770,001 to 2,770,621 _RS13285 BWI76_RS13290: BWI76_RS13290 - protocatechuate 3,4-dioxygenase subunit beta, at 2,770,618 to 2,771,358 _RS13290 BWI76_RS13295: BWI76_RS13295 - DUF1338 domain-containing protein, at 2,771,598 to 2,772,941 _RS13295 Position (kb) 2770 2771 2772Strain fitness (log2 ratio) -1 0 1at 2769.700 kb on + strand, within BWI76_RS13280at 2769.728 kb on - strand, within BWI76_RS13280at 2769.757 kb on - strandat 2769.783 kb on - strandat 2769.794 kb on + strandat 2770.020 kb on + strandat 2770.256 kb on + strand, within BWI76_RS13285at 2770.653 kb on + strandat 2770.661 kb on - strandat 2770.888 kb on + strand, within BWI76_RS13290at 2770.919 kb on - strand, within BWI76_RS13290at 2771.203 kb on - strand, within BWI76_RS13290at 2771.475 kb on + strandat 2771.602 kb on - strandat 2771.622 kb on - strandat 2771.689 kb on - strandat 2771.718 kb on - strandat 2771.737 kb on + strand, within BWI76_RS13295at 2771.759 kb on + strand, within BWI76_RS13295at 2772.295 kb on + strand, within BWI76_RS13295

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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2,769,700 + BWI76_RS13280 0.86 -0.8
2,769,728 - BWI76_RS13280 0.89 -0.6
2,769,757 - +1.4
2,769,783 - +1.0
2,769,794 + -0.2
2,770,020 + +1.5
2,770,256 + BWI76_RS13285 0.41 -0.1
2,770,653 + -0.4
2,770,661 - +0.0
2,770,888 + BWI76_RS13290 0.36 -0.5
2,770,919 - BWI76_RS13290 0.41 -0.6
2,771,203 - BWI76_RS13290 0.79 -0.2
2,771,475 + +0.7
2,771,602 - -0.1
2,771,622 - +0.5
2,771,689 - +0.9
2,771,718 - +0.2
2,771,737 + BWI76_RS13295 0.10 -0.4
2,771,759 + BWI76_RS13295 0.12 +1.1
2,772,295 + BWI76_RS13295 0.52 +0.8

Or see this region's nucleotide sequence