Experiment: Lomefloxacin 0.0005 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29330 and AO356_29335 are separated by 46 nucleotides AO356_29335 and AO356_29340 are separated by 34 nucleotides AO356_29340 and AO356_29345 are separated by 68 nucleotides
AO356_29330: AO356_29330 - ABC transporter substrate-binding protein, at 6,822,318 to 6,823,295
_29330
AO356_29335: AO356_29335 - sugar dehydrogenase, at 6,823,342 to 6,824,103
_29335
AO356_29340: AO356_29340 - multidrug DMT transporter permease, at 6,824,138 to 6,824,965
_29340
AO356_29345: AO356_29345 - LysR family transcriptional regulator, at 6,825,034 to 6,825,939
_29345
Position (kb)
6823
6824
6825 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6822.654 kb on + strand, within AO356_29330 at 6822.654 kb on + strand, within AO356_29330 at 6822.655 kb on - strand, within AO356_29330 at 6822.655 kb on - strand, within AO356_29330 at 6822.655 kb on - strand, within AO356_29330 at 6822.841 kb on - strand, within AO356_29330 at 6822.881 kb on + strand, within AO356_29330 at 6822.978 kb on + strand, within AO356_29330 at 6822.979 kb on - strand, within AO356_29330 at 6822.979 kb on - strand, within AO356_29330 at 6822.979 kb on - strand, within AO356_29330 at 6822.987 kb on + strand, within AO356_29330 at 6822.990 kb on + strand, within AO356_29330 at 6822.991 kb on - strand, within AO356_29330 at 6823.042 kb on + strand, within AO356_29330 at 6823.042 kb on + strand, within AO356_29330 at 6823.044 kb on + strand, within AO356_29330 at 6823.045 kb on - strand, within AO356_29330 at 6823.171 kb on - strand, within AO356_29330 at 6823.186 kb on + strand, within AO356_29330 at 6823.343 kb on + strand at 6823.343 kb on + strand at 6823.344 kb on - strand at 6823.517 kb on + strand, within AO356_29335 at 6823.517 kb on + strand, within AO356_29335 at 6823.517 kb on + strand, within AO356_29335 at 6823.518 kb on - strand, within AO356_29335 at 6823.518 kb on - strand, within AO356_29335 at 6823.518 kb on - strand, within AO356_29335 at 6823.518 kb on - strand, within AO356_29335 at 6823.518 kb on - strand, within AO356_29335 at 6823.518 kb on - strand, within AO356_29335 at 6823.521 kb on + strand, within AO356_29335 at 6823.521 kb on + strand, within AO356_29335 at 6823.521 kb on + strand, within AO356_29335 at 6823.521 kb on + strand, within AO356_29335 at 6823.521 kb on + strand, within AO356_29335 at 6823.521 kb on + strand, within AO356_29335 at 6823.521 kb on + strand, within AO356_29335 at 6823.521 kb on + strand, within AO356_29335 at 6823.521 kb on + strand, within AO356_29335 at 6823.521 kb on + strand, within AO356_29335 at 6823.522 kb on - strand, within AO356_29335 at 6823.522 kb on - strand, within AO356_29335 at 6823.522 kb on - strand, within AO356_29335 at 6823.522 kb on - strand, within AO356_29335 at 6823.522 kb on - strand, within AO356_29335 at 6823.629 kb on - strand, within AO356_29335 at 6823.629 kb on - strand, within AO356_29335 at 6823.791 kb on + strand, within AO356_29335 at 6823.991 kb on + strand, within AO356_29335 at 6823.992 kb on - strand, within AO356_29335 at 6823.992 kb on - strand, within AO356_29335 at 6823.992 kb on - strand, within AO356_29335 at 6823.992 kb on - strand, within AO356_29335 at 6823.992 kb on - strand, within AO356_29335 at 6824.299 kb on - strand, within AO356_29340 at 6824.299 kb on - strand, within AO356_29340 at 6824.299 kb on - strand, within AO356_29340 at 6824.313 kb on + strand, within AO356_29340 at 6824.313 kb on + strand, within AO356_29340 at 6824.357 kb on - strand, within AO356_29340 at 6824.403 kb on + strand, within AO356_29340 at 6824.403 kb on + strand, within AO356_29340 at 6824.404 kb on - strand, within AO356_29340 at 6824.452 kb on - strand, within AO356_29340 at 6824.484 kb on - strand, within AO356_29340 at 6824.484 kb on - strand, within AO356_29340 at 6824.484 kb on - strand, within AO356_29340 at 6824.484 kb on - strand, within AO356_29340 at 6824.536 kb on - strand, within AO356_29340 at 6824.570 kb on - strand, within AO356_29340 at 6824.727 kb on + strand, within AO356_29340 at 6824.728 kb on - strand, within AO356_29340 at 6824.958 kb on - strand at 6824.976 kb on - strand at 6824.976 kb on - strand at 6825.097 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.0005 mM remove 6,822,654 + AO356_29330 0.34 +1.0 6,822,654 + AO356_29330 0.34 +0.5 6,822,655 - AO356_29330 0.34 +0.4 6,822,655 - AO356_29330 0.34 +1.4 6,822,655 - AO356_29330 0.34 -2.0 6,822,841 - AO356_29330 0.53 +0.0 6,822,881 + AO356_29330 0.58 +0.4 6,822,978 + AO356_29330 0.67 +0.4 6,822,979 - AO356_29330 0.68 +0.2 6,822,979 - AO356_29330 0.68 -0.7 6,822,979 - AO356_29330 0.68 +0.1 6,822,987 + AO356_29330 0.68 -0.2 6,822,990 + AO356_29330 0.69 +0.5 6,822,991 - AO356_29330 0.69 -1.2 6,823,042 + AO356_29330 0.74 -0.1 6,823,042 + AO356_29330 0.74 +0.1 6,823,044 + AO356_29330 0.74 +0.4 6,823,045 - AO356_29330 0.74 -1.7 6,823,171 - AO356_29330 0.87 +1.8 6,823,186 + AO356_29330 0.89 -1.5 6,823,343 + -1.2 6,823,343 + -0.4 6,823,344 - +0.8 6,823,517 + AO356_29335 0.23 +0.0 6,823,517 + AO356_29335 0.23 -1.3 6,823,517 + AO356_29335 0.23 -0.6 6,823,518 - AO356_29335 0.23 -0.5 6,823,518 - AO356_29335 0.23 -0.6 6,823,518 - AO356_29335 0.23 -0.5 6,823,518 - AO356_29335 0.23 -1.1 6,823,518 - AO356_29335 0.23 -0.3 6,823,518 - AO356_29335 0.23 -2.9 6,823,521 + AO356_29335 0.23 -1.5 6,823,521 + AO356_29335 0.23 -0.5 6,823,521 + AO356_29335 0.23 -0.8 6,823,521 + AO356_29335 0.23 -2.3 6,823,521 + AO356_29335 0.23 -0.6 6,823,521 + AO356_29335 0.23 +0.4 6,823,521 + AO356_29335 0.23 -0.2 6,823,521 + AO356_29335 0.23 +1.0 6,823,521 + AO356_29335 0.23 +1.5 6,823,521 + AO356_29335 0.23 -1.0 6,823,522 - AO356_29335 0.24 -0.5 6,823,522 - AO356_29335 0.24 -0.5 6,823,522 - AO356_29335 0.24 +0.4 6,823,522 - AO356_29335 0.24 +0.4 6,823,522 - AO356_29335 0.24 -0.1 6,823,629 - AO356_29335 0.38 +1.2 6,823,629 - AO356_29335 0.38 +1.4 6,823,791 + AO356_29335 0.59 +0.2 6,823,991 + AO356_29335 0.85 -1.2 6,823,992 - AO356_29335 0.85 -1.2 6,823,992 - AO356_29335 0.85 -0.9 6,823,992 - AO356_29335 0.85 +0.9 6,823,992 - AO356_29335 0.85 -1.0 6,823,992 - AO356_29335 0.85 -1.1 6,824,299 - AO356_29340 0.19 -1.6 6,824,299 - AO356_29340 0.19 +0.9 6,824,299 - AO356_29340 0.19 -1.3 6,824,313 + AO356_29340 0.21 -0.5 6,824,313 + AO356_29340 0.21 -0.5 6,824,357 - AO356_29340 0.26 -0.9 6,824,403 + AO356_29340 0.32 -0.6 6,824,403 + AO356_29340 0.32 -0.0 6,824,404 - AO356_29340 0.32 -0.3 6,824,452 - AO356_29340 0.38 +1.0 6,824,484 - AO356_29340 0.42 -0.2 6,824,484 - AO356_29340 0.42 -1.1 6,824,484 - AO356_29340 0.42 -0.1 6,824,484 - AO356_29340 0.42 +0.1 6,824,536 - AO356_29340 0.48 -0.1 6,824,570 - AO356_29340 0.52 -1.3 6,824,727 + AO356_29340 0.71 -0.2 6,824,728 - AO356_29340 0.71 +0.4 6,824,958 - -0.9 6,824,976 - +1.4 6,824,976 - -0.5 6,825,097 - -0.2
Or see this region's nucleotide sequence