Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29270

Experiment: Lomefloxacin 0.0005 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29260 and AO356_29265 are separated by 37 nucleotidesAO356_29265 and AO356_29270 are separated by 1 nucleotidesAO356_29270 and AO356_29275 are separated by 362 nucleotides AO356_29260: AO356_29260 - nitrate ABC transporter substrate-binding protein, at 6,805,307 to 6,806,332 _29260 AO356_29265: AO356_29265 - sulfonate ABC transporter ATP-binding protein, at 6,806,370 to 6,807,158 _29265 AO356_29270: AO356_29270 - ABC transporter permease, at 6,807,160 to 6,808,032 _29270 AO356_29275: AO356_29275 - alkanesulfonate monooxygenase, at 6,808,395 to 6,809,483 _29275 Position (kb) 6807 6808 6809Strain fitness (log2 ratio) -2 -1 0 1 2at 6806.348 kb on + strandat 6807.096 kb on + strandat 6807.105 kb on - strandat 6807.105 kb on - strandat 6807.114 kb on + strandat 6807.249 kb on - strand, within AO356_29270at 6807.252 kb on + strand, within AO356_29270at 6808.011 kb on + strandat 6808.318 kb on + strandat 6808.484 kb on - strandat 6808.753 kb on - strand, within AO356_29275at 6808.791 kb on + strand, within AO356_29275at 6808.791 kb on + strand, within AO356_29275at 6808.906 kb on + strand, within AO356_29275at 6808.914 kb on + strand, within AO356_29275at 6808.915 kb on - strand, within AO356_29275

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.0005 mM
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6,806,348 + +0.9
6,807,096 + -2.0
6,807,105 - +0.5
6,807,105 - -1.6
6,807,114 + -2.1
6,807,249 - AO356_29270 0.10 +0.2
6,807,252 + AO356_29270 0.11 -2.1
6,808,011 + -0.9
6,808,318 + +0.6
6,808,484 - +1.9
6,808,753 - AO356_29275 0.33 +1.0
6,808,791 + AO356_29275 0.36 -0.2
6,808,791 + AO356_29275 0.36 +0.5
6,808,906 + AO356_29275 0.47 -2.3
6,808,914 + AO356_29275 0.48 +0.0
6,808,915 - AO356_29275 0.48 -0.2

Or see this region's nucleotide sequence