Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28545

Experiment: Lomefloxacin 0.0005 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_28540 and AO356_28545 are separated by 78 nucleotidesAO356_28545 and AO356_28550 are separated by 53 nucleotides AO356_28540: AO356_28540 - D-mannose transporter (from data), at 6,633,340 to 6,634,632 _28540 AO356_28545: AO356_28545 - alcohol dehydrogenase, at 6,634,711 to 6,635,742 _28545 AO356_28550: AO356_28550 - bifunctional D-altronate/D-mannonate dehydratase, at 6,635,796 to 6,637,007 _28550 Position (kb) 6634 6635 6636Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 6633.899 kb on + strand, within AO356_28540at 6633.935 kb on + strand, within AO356_28540at 6633.935 kb on + strand, within AO356_28540at 6633.936 kb on - strand, within AO356_28540at 6633.936 kb on - strand, within AO356_28540at 6633.936 kb on - strand, within AO356_28540at 6633.936 kb on - strand, within AO356_28540at 6633.939 kb on + strand, within AO356_28540at 6633.940 kb on - strand, within AO356_28540at 6633.941 kb on + strand, within AO356_28540at 6634.134 kb on + strand, within AO356_28540at 6634.134 kb on + strand, within AO356_28540at 6634.157 kb on + strand, within AO356_28540at 6634.157 kb on + strand, within AO356_28540at 6634.260 kb on - strand, within AO356_28540at 6634.467 kb on - strand, within AO356_28540at 6634.572 kb on - strandat 6634.615 kb on - strandat 6635.646 kb on - strandat 6635.854 kb on + strandat 6635.855 kb on - strandat 6635.855 kb on - strandat 6636.163 kb on + strand, within AO356_28550at 6636.163 kb on + strand, within AO356_28550at 6636.439 kb on + strand, within AO356_28550at 6636.439 kb on + strand, within AO356_28550at 6636.448 kb on + strand, within AO356_28550at 6636.502 kb on + strand, within AO356_28550at 6636.532 kb on + strand, within AO356_28550at 6636.532 kb on + strand, within AO356_28550at 6636.580 kb on + strand, within AO356_28550at 6636.649 kb on + strand, within AO356_28550at 6636.692 kb on - strand, within AO356_28550

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.0005 mM
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6,633,899 + AO356_28540 0.43 -2.0
6,633,935 + AO356_28540 0.46 -1.4
6,633,935 + AO356_28540 0.46 -0.5
6,633,936 - AO356_28540 0.46 -1.5
6,633,936 - AO356_28540 0.46 +0.3
6,633,936 - AO356_28540 0.46 -1.2
6,633,936 - AO356_28540 0.46 +0.0
6,633,939 + AO356_28540 0.46 -2.1
6,633,940 - AO356_28540 0.46 +0.0
6,633,941 + AO356_28540 0.46 +1.6
6,634,134 + AO356_28540 0.61 -0.5
6,634,134 + AO356_28540 0.61 -1.6
6,634,157 + AO356_28540 0.63 -0.9
6,634,157 + AO356_28540 0.63 +0.8
6,634,260 - AO356_28540 0.71 -0.9
6,634,467 - AO356_28540 0.87 +0.0
6,634,572 - -0.8
6,634,615 - +1.0
6,635,646 - +0.8
6,635,854 + +4.3
6,635,855 - +0.4
6,635,855 - -1.6
6,636,163 + AO356_28550 0.30 -3.1
6,636,163 + AO356_28550 0.30 -0.4
6,636,439 + AO356_28550 0.53 -0.6
6,636,439 + AO356_28550 0.53 +0.3
6,636,448 + AO356_28550 0.54 -0.1
6,636,502 + AO356_28550 0.58 -0.3
6,636,532 + AO356_28550 0.61 -1.7
6,636,532 + AO356_28550 0.61 +0.0
6,636,580 + AO356_28550 0.65 -0.1
6,636,649 + AO356_28550 0.70 -0.3
6,636,692 - AO356_28550 0.74 +0.9

Or see this region's nucleotide sequence