Experiment: Lomefloxacin 0.0005 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27555 and AO356_27560 overlap by 4 nucleotides AO356_27560 and AO356_27565 are separated by 219 nucleotides
AO356_27555: AO356_27555 - multidrug transporter, at 6,284,509 to 6,287,589
_27555
AO356_27560: AO356_27560 - hypothetical protein, at 6,287,586 to 6,288,695
_27560
AO356_27565: AO356_27565 - RND transporter, at 6,288,915 to 6,290,378
_27565
Position (kb)
6287
6288
6289 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6286.791 kb on - strand, within AO356_27555 at 6287.258 kb on + strand, within AO356_27555 at 6287.258 kb on + strand, within AO356_27555 at 6287.439 kb on + strand at 6287.440 kb on - strand at 6287.923 kb on + strand, within AO356_27560 at 6287.923 kb on + strand, within AO356_27560 at 6287.923 kb on + strand, within AO356_27560 at 6287.923 kb on + strand, within AO356_27560 at 6287.924 kb on - strand, within AO356_27560 at 6287.924 kb on - strand, within AO356_27560 at 6288.011 kb on - strand, within AO356_27560 at 6288.570 kb on + strand, within AO356_27560 at 6288.695 kb on + strand at 6288.695 kb on + strand at 6288.695 kb on + strand at 6288.695 kb on + strand at 6288.695 kb on + strand at 6288.696 kb on - strand at 6288.696 kb on - strand at 6288.696 kb on - strand at 6288.696 kb on - strand at 6288.696 kb on - strand at 6288.707 kb on - strand at 6288.707 kb on - strand at 6288.806 kb on + strand at 6288.828 kb on - strand at 6289.306 kb on - strand, within AO356_27565 at 6289.322 kb on + strand, within AO356_27565 at 6289.322 kb on + strand, within AO356_27565 at 6289.323 kb on - strand, within AO356_27565 at 6289.326 kb on + strand, within AO356_27565 at 6289.473 kb on + strand, within AO356_27565 at 6289.473 kb on + strand, within AO356_27565 at 6289.474 kb on - strand, within AO356_27565 at 6289.474 kb on - strand, within AO356_27565 at 6289.474 kb on - strand, within AO356_27565 at 6289.566 kb on + strand, within AO356_27565
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.0005 mM remove 6,286,791 - AO356_27555 0.74 -0.7 6,287,258 + AO356_27555 0.89 -1.2 6,287,258 + AO356_27555 0.89 -0.4 6,287,439 + +0.7 6,287,440 - -0.2 6,287,923 + AO356_27560 0.30 +0.5 6,287,923 + AO356_27560 0.30 +0.7 6,287,923 + AO356_27560 0.30 +2.1 6,287,923 + AO356_27560 0.30 -0.5 6,287,924 - AO356_27560 0.30 -0.5 6,287,924 - AO356_27560 0.30 -1.5 6,288,011 - AO356_27560 0.38 +0.3 6,288,570 + AO356_27560 0.89 -0.0 6,288,695 + -1.2 6,288,695 + +1.2 6,288,695 + -2.1 6,288,695 + -0.6 6,288,695 + +0.4 6,288,696 - +0.3 6,288,696 - +0.2 6,288,696 - -0.3 6,288,696 - -1.2 6,288,696 - +1.3 6,288,707 - -2.0 6,288,707 - +1.5 6,288,806 + -0.1 6,288,828 - +0.4 6,289,306 - AO356_27565 0.27 -1.0 6,289,322 + AO356_27565 0.28 +0.1 6,289,322 + AO356_27565 0.28 -2.1 6,289,323 - AO356_27565 0.28 -0.8 6,289,326 + AO356_27565 0.28 +1.4 6,289,473 + AO356_27565 0.38 +0.6 6,289,473 + AO356_27565 0.38 -0.0 6,289,474 - AO356_27565 0.38 -0.0 6,289,474 - AO356_27565 0.38 -0.8 6,289,474 - AO356_27565 0.38 -1.4 6,289,566 + AO356_27565 0.44 -0.5
Or see this region's nucleotide sequence