Experiment: Lomefloxacin 0.0005 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26285 and AO356_26290 are separated by 234 nucleotides AO356_26290 and AO356_26295 are separated by 36 nucleotides
AO356_26285: AO356_26285 - sugar ABC transporter substrate-binding protein, at 5,953,383 to 5,954,327
_26285
AO356_26290: AO356_26290 - TonB-dependent receptor, at 5,954,562 to 5,956,985
_26290
AO356_26295: AO356_26295 - ribosomal protein S3AE, at 5,957,022 to 5,957,423
_26295
Position (kb) 5954
5955
5956
5957 Strain fitness (log2 ratio) -2
-1
0
1 at 5953.888 kb on - strand, within AO356_26285 at 5953.975 kb on - strand, within AO356_26285 at 5954.346 kb on + strand at 5954.346 kb on + strand at 5954.347 kb on - strand at 5954.465 kb on - strand at 5954.486 kb on + strand at 5954.486 kb on + strand at 5954.575 kb on + strand at 5954.576 kb on - strand at 5954.576 kb on - strand at 5954.576 kb on - strand at 5954.704 kb on - strand at 5954.901 kb on + strand, within AO356_26290 at 5954.902 kb on - strand, within AO356_26290 at 5954.992 kb on - strand, within AO356_26290 at 5955.078 kb on + strand, within AO356_26290 at 5955.078 kb on + strand, within AO356_26290 at 5955.078 kb on + strand, within AO356_26290 at 5955.078 kb on + strand, within AO356_26290 at 5955.078 kb on + strand, within AO356_26290 at 5955.079 kb on - strand, within AO356_26290 at 5955.079 kb on - strand, within AO356_26290 at 5955.229 kb on - strand, within AO356_26290 at 5955.259 kb on - strand, within AO356_26290 at 5955.414 kb on + strand, within AO356_26290 at 5955.414 kb on + strand, within AO356_26290 at 5955.414 kb on + strand, within AO356_26290 at 5955.415 kb on - strand, within AO356_26290 at 5955.415 kb on - strand, within AO356_26290 at 5955.415 kb on - strand, within AO356_26290 at 5955.415 kb on - strand, within AO356_26290 at 5955.415 kb on - strand, within AO356_26290 at 5955.415 kb on - strand, within AO356_26290 at 5955.415 kb on - strand, within AO356_26290 at 5955.415 kb on - strand, within AO356_26290 at 5955.589 kb on + strand, within AO356_26290 at 5955.589 kb on + strand, within AO356_26290 at 5955.703 kb on - strand, within AO356_26290 at 5955.703 kb on - strand, within AO356_26290 at 5955.703 kb on - strand, within AO356_26290 at 5955.790 kb on - strand, within AO356_26290 at 5955.990 kb on + strand, within AO356_26290 at 5955.990 kb on + strand, within AO356_26290 at 5955.991 kb on - strand, within AO356_26290 at 5956.054 kb on + strand, within AO356_26290 at 5956.102 kb on - strand, within AO356_26290 at 5956.308 kb on + strand, within AO356_26290 at 5956.317 kb on + strand, within AO356_26290 at 5956.318 kb on - strand, within AO356_26290 at 5956.318 kb on - strand, within AO356_26290 at 5956.318 kb on - strand, within AO356_26290 at 5956.318 kb on - strand, within AO356_26290 at 5956.318 kb on - strand, within AO356_26290 at 5956.318 kb on - strand, within AO356_26290 at 5956.422 kb on + strand, within AO356_26290 at 5956.422 kb on + strand, within AO356_26290 at 5956.672 kb on - strand, within AO356_26290 at 5956.744 kb on - strand at 5956.759 kb on - strand at 5956.891 kb on - strand at 5956.956 kb on + strand at 5956.957 kb on - strand at 5956.957 kb on - strand at 5956.957 kb on - strand at 5956.983 kb on + strand at 5957.274 kb on - strand, within AO356_26295 at 5957.541 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.0005 mM remove 5,953,888 - AO356_26285 0.53 -0.6 5,953,975 - AO356_26285 0.63 +0.6 5,954,346 + +0.7 5,954,346 + +1.3 5,954,347 - +0.1 5,954,465 - +0.1 5,954,486 + +1.6 5,954,486 + -0.2 5,954,575 + +0.2 5,954,576 - +0.5 5,954,576 - +0.2 5,954,576 - -0.3 5,954,704 - +1.6 5,954,901 + AO356_26290 0.14 +0.5 5,954,902 - AO356_26290 0.14 +0.8 5,954,992 - AO356_26290 0.18 +0.4 5,955,078 + AO356_26290 0.21 -0.6 5,955,078 + AO356_26290 0.21 -1.2 5,955,078 + AO356_26290 0.21 -1.9 5,955,078 + AO356_26290 0.21 -0.2 5,955,078 + AO356_26290 0.21 +0.7 5,955,079 - AO356_26290 0.21 -0.0 5,955,079 - AO356_26290 0.21 +1.2 5,955,229 - AO356_26290 0.28 +0.5 5,955,259 - AO356_26290 0.29 +0.5 5,955,414 + AO356_26290 0.35 -0.2 5,955,414 + AO356_26290 0.35 +0.2 5,955,414 + AO356_26290 0.35 +1.7 5,955,415 - AO356_26290 0.35 -0.2 5,955,415 - AO356_26290 0.35 +1.0 5,955,415 - AO356_26290 0.35 -0.8 5,955,415 - AO356_26290 0.35 +1.0 5,955,415 - AO356_26290 0.35 +0.5 5,955,415 - AO356_26290 0.35 -0.9 5,955,415 - AO356_26290 0.35 -0.4 5,955,415 - AO356_26290 0.35 -0.4 5,955,589 + AO356_26290 0.42 -0.6 5,955,589 + AO356_26290 0.42 +0.0 5,955,703 - AO356_26290 0.47 -0.3 5,955,703 - AO356_26290 0.47 +0.5 5,955,703 - AO356_26290 0.47 -0.8 5,955,790 - AO356_26290 0.51 -0.4 5,955,990 + AO356_26290 0.59 -0.2 5,955,990 + AO356_26290 0.59 -0.6 5,955,991 - AO356_26290 0.59 +0.3 5,956,054 + AO356_26290 0.62 -0.0 5,956,102 - AO356_26290 0.64 -0.5 5,956,308 + AO356_26290 0.72 +1.0 5,956,317 + AO356_26290 0.72 +0.1 5,956,318 - AO356_26290 0.72 +0.2 5,956,318 - AO356_26290 0.72 +1.4 5,956,318 - AO356_26290 0.72 -0.1 5,956,318 - AO356_26290 0.72 -1.3 5,956,318 - AO356_26290 0.72 +0.5 5,956,318 - AO356_26290 0.72 +0.2 5,956,422 + AO356_26290 0.77 +0.5 5,956,422 + AO356_26290 0.77 -0.6 5,956,672 - AO356_26290 0.87 -0.6 5,956,744 - -1.3 5,956,759 - +1.2 5,956,891 - -0.8 5,956,956 + -0.6 5,956,957 - -0.0 5,956,957 - +0.6 5,956,957 - -0.4 5,956,983 + -1.5 5,957,274 - AO356_26295 0.63 -1.3 5,957,541 - -0.8
Or see this region's nucleotide sequence