Experiment: Lomefloxacin 0.0005 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26235 and AO356_26240 are separated by 13 nucleotides AO356_26240 and AO356_26245 overlap by 4 nucleotides AO356_26245 and AO356_26250 are separated by 150 nucleotides
AO356_26235: AO356_26235 - protein TolQ, at 5,944,253 to 5,944,960
_26235
AO356_26240: AO356_26240 - protein TolR, at 5,944,974 to 5,945,420
_26240
AO356_26245: AO356_26245 - energy transducer TonB, at 5,945,417 to 5,946,238
_26245
AO356_26250: AO356_26250 - AraC family transcriptional regulator, at 5,946,389 to 5,947,282
_26250
Position (kb) 5945
5946
5947 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5944.479 kb on + strand, within AO356_26235 at 5944.479 kb on + strand, within AO356_26235 at 5944.479 kb on + strand, within AO356_26235 at 5944.480 kb on - strand, within AO356_26235 at 5944.558 kb on + strand, within AO356_26235 at 5944.676 kb on + strand, within AO356_26235 at 5944.835 kb on + strand, within AO356_26235 at 5944.835 kb on + strand, within AO356_26235 at 5944.835 kb on + strand, within AO356_26235 at 5944.880 kb on + strand, within AO356_26235 at 5945.032 kb on - strand, within AO356_26240 at 5945.032 kb on - strand, within AO356_26240 at 5945.032 kb on - strand, within AO356_26240 at 5945.190 kb on + strand, within AO356_26240 at 5945.193 kb on + strand, within AO356_26240 at 5945.194 kb on - strand, within AO356_26240 at 5945.310 kb on + strand, within AO356_26240 at 5945.311 kb on - strand, within AO356_26240 at 5945.596 kb on + strand, within AO356_26245 at 5945.978 kb on + strand, within AO356_26245 at 5946.060 kb on - strand, within AO356_26245 at 5946.214 kb on + strand at 5946.214 kb on + strand at 5946.241 kb on - strand at 5946.434 kb on + strand at 5946.550 kb on - strand, within AO356_26250 at 5946.550 kb on - strand, within AO356_26250 at 5946.550 kb on - strand, within AO356_26250 at 5946.744 kb on + strand, within AO356_26250 at 5946.745 kb on - strand, within AO356_26250 at 5946.745 kb on - strand, within AO356_26250 at 5946.948 kb on + strand, within AO356_26250 at 5946.948 kb on + strand, within AO356_26250
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.0005 mM remove 5,944,479 + AO356_26235 0.32 -2.8 5,944,479 + AO356_26235 0.32 -1.8 5,944,479 + AO356_26235 0.32 -1.6 5,944,480 - AO356_26235 0.32 -2.1 5,944,558 + AO356_26235 0.43 -0.6 5,944,676 + AO356_26235 0.60 +0.3 5,944,835 + AO356_26235 0.82 -1.6 5,944,835 + AO356_26235 0.82 -0.3 5,944,835 + AO356_26235 0.82 -0.8 5,944,880 + AO356_26235 0.89 -0.8 5,945,032 - AO356_26240 0.13 +1.0 5,945,032 - AO356_26240 0.13 +0.5 5,945,032 - AO356_26240 0.13 +0.2 5,945,190 + AO356_26240 0.48 +0.8 5,945,193 + AO356_26240 0.49 -0.5 5,945,194 - AO356_26240 0.49 +0.9 5,945,310 + AO356_26240 0.75 -0.3 5,945,311 - AO356_26240 0.75 -0.5 5,945,596 + AO356_26245 0.22 -0.0 5,945,978 + AO356_26245 0.68 -1.1 5,946,060 - AO356_26245 0.78 +0.4 5,946,214 + +0.3 5,946,214 + -0.6 5,946,241 - -0.0 5,946,434 + +0.2 5,946,550 - AO356_26250 0.18 +1.1 5,946,550 - AO356_26250 0.18 -0.7 5,946,550 - AO356_26250 0.18 -0.5 5,946,744 + AO356_26250 0.40 +1.9 5,946,745 - AO356_26250 0.40 +0.1 5,946,745 - AO356_26250 0.40 +0.6 5,946,948 + AO356_26250 0.63 -0.6 5,946,948 + AO356_26250 0.63 -1.1
Or see this region's nucleotide sequence