Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_25770

Experiment: Lomefloxacin 0.0005 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_25765 and AO356_25770 overlap by 4 nucleotidesAO356_25770 and AO356_25775 are separated by 44 nucleotidesAO356_25775 and AO356_25780 are separated by 205 nucleotides AO356_25765: AO356_25765 - carnitine dehydratase, at 5,824,859 to 5,826,340 _25765 AO356_25770: AO356_25770 - 3-oxoadipate enol-lactonase, at 5,826,337 to 5,827,170 _25770 AO356_25775: AO356_25775 - peptide synthetase, at 5,827,215 to 5,827,805 _25775 AO356_25780: AO356_25780 - hypothetical protein, at 5,828,011 to 5,829,498 _25780 Position (kb) 5826 5827 5828Strain fitness (log2 ratio) -2 -1 0 1at 5825.445 kb on + strand, within AO356_25765at 5825.446 kb on - strand, within AO356_25765at 5825.506 kb on - strand, within AO356_25765at 5825.560 kb on + strand, within AO356_25765at 5825.561 kb on - strand, within AO356_25765at 5825.869 kb on - strand, within AO356_25765at 5825.869 kb on - strand, within AO356_25765at 5825.869 kb on - strand, within AO356_25765at 5825.926 kb on + strand, within AO356_25765at 5825.926 kb on + strand, within AO356_25765at 5826.355 kb on + strandat 5826.428 kb on - strand, within AO356_25770at 5826.438 kb on + strand, within AO356_25770at 5826.438 kb on + strand, within AO356_25770at 5826.438 kb on + strand, within AO356_25770at 5826.439 kb on - strand, within AO356_25770at 5826.439 kb on - strand, within AO356_25770at 5826.584 kb on + strand, within AO356_25770at 5826.584 kb on + strand, within AO356_25770at 5826.584 kb on + strand, within AO356_25770at 5826.611 kb on + strand, within AO356_25770at 5826.612 kb on - strand, within AO356_25770at 5826.612 kb on - strand, within AO356_25770at 5826.692 kb on + strand, within AO356_25770at 5826.692 kb on + strand, within AO356_25770at 5827.127 kb on + strandat 5827.128 kb on - strandat 5827.255 kb on + strandat 5827.255 kb on + strandat 5827.255 kb on + strandat 5827.256 kb on - strandat 5827.363 kb on + strand, within AO356_25775at 5827.363 kb on + strand, within AO356_25775at 5827.363 kb on + strand, within AO356_25775at 5827.363 kb on + strand, within AO356_25775at 5827.364 kb on - strand, within AO356_25775at 5827.565 kb on - strand, within AO356_25775at 5827.774 kb on + strandat 5827.774 kb on + strandat 5827.774 kb on + strandat 5827.774 kb on + strandat 5827.775 kb on - strandat 5827.788 kb on - strandat 5827.827 kb on - strandat 5828.068 kb on + strandat 5828.069 kb on - strandat 5828.069 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.0005 mM
remove
5,825,445 + AO356_25765 0.40 -0.1
5,825,446 - AO356_25765 0.40 +0.9
5,825,506 - AO356_25765 0.44 -1.0
5,825,560 + AO356_25765 0.47 -0.9
5,825,561 - AO356_25765 0.47 +1.5
5,825,869 - AO356_25765 0.68 -1.2
5,825,869 - AO356_25765 0.68 -1.9
5,825,869 - AO356_25765 0.68 +0.2
5,825,926 + AO356_25765 0.72 -0.3
5,825,926 + AO356_25765 0.72 -1.9
5,826,355 + -0.4
5,826,428 - AO356_25770 0.11 -0.0
5,826,438 + AO356_25770 0.12 -1.7
5,826,438 + AO356_25770 0.12 +0.4
5,826,438 + AO356_25770 0.12 +0.1
5,826,439 - AO356_25770 0.12 -1.9
5,826,439 - AO356_25770 0.12 -0.4
5,826,584 + AO356_25770 0.30 -0.0
5,826,584 + AO356_25770 0.30 -0.1
5,826,584 + AO356_25770 0.30 -0.2
5,826,611 + AO356_25770 0.33 -0.1
5,826,612 - AO356_25770 0.33 -0.1
5,826,612 - AO356_25770 0.33 -0.2
5,826,692 + AO356_25770 0.43 -0.3
5,826,692 + AO356_25770 0.43 +0.6
5,827,127 + -1.8
5,827,128 - -0.5
5,827,255 + +0.5
5,827,255 + +1.6
5,827,255 + -1.5
5,827,256 - +1.3
5,827,363 + AO356_25775 0.25 -1.2
5,827,363 + AO356_25775 0.25 +0.1
5,827,363 + AO356_25775 0.25 -0.1
5,827,363 + AO356_25775 0.25 -0.9
5,827,364 - AO356_25775 0.25 -0.4
5,827,565 - AO356_25775 0.59 -0.2
5,827,774 + -2.2
5,827,774 + -1.4
5,827,774 + -1.2
5,827,774 + +0.4
5,827,775 - -0.0
5,827,788 - -0.2
5,827,827 - +0.3
5,828,068 + -0.1
5,828,069 - -0.1
5,828,069 - -0.3

Or see this region's nucleotide sequence