Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24435

Experiment: Lomefloxacin 0.0005 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24425 and AO356_24430 are separated by 175 nucleotidesAO356_24430 and AO356_24435 are separated by 55 nucleotidesAO356_24435 and AO356_24440 are separated by 137 nucleotides AO356_24425: AO356_24425 - hypothetical protein, at 5,515,435 to 5,515,923 _24425 AO356_24430: AO356_24430 - lysine transporter LysE, at 5,516,099 to 5,516,686 _24430 AO356_24435: AO356_24435 - AraC family transcriptional regulator, at 5,516,742 to 5,517,566 _24435 AO356_24440: AO356_24440 - diguanylate cyclase, at 5,517,704 to 5,518,666 _24440 Position (kb) 5516 5517 5518Strain fitness (log2 ratio) -2 -1 0 1 2at 5516.059 kb on + strandat 5516.059 kb on + strandat 5516.059 kb on + strandat 5516.060 kb on - strandat 5516.060 kb on - strandat 5516.060 kb on - strandat 5516.082 kb on + strandat 5516.082 kb on + strandat 5516.082 kb on + strandat 5516.082 kb on + strandat 5516.082 kb on + strandat 5516.083 kb on - strandat 5516.147 kb on - strandat 5516.147 kb on - strandat 5516.286 kb on + strand, within AO356_24430at 5516.286 kb on + strand, within AO356_24430at 5516.286 kb on + strand, within AO356_24430at 5516.286 kb on + strand, within AO356_24430at 5516.421 kb on - strand, within AO356_24430at 5516.535 kb on - strand, within AO356_24430at 5516.550 kb on - strand, within AO356_24430at 5516.593 kb on + strand, within AO356_24430at 5516.594 kb on - strand, within AO356_24430at 5516.669 kb on + strandat 5516.670 kb on - strandat 5516.670 kb on - strandat 5516.670 kb on - strandat 5516.721 kb on + strandat 5516.721 kb on + strandat 5516.721 kb on + strandat 5516.722 kb on - strandat 5516.722 kb on - strandat 5516.725 kb on + strandat 5516.725 kb on + strandat 5516.726 kb on - strandat 5516.726 kb on - strandat 5516.765 kb on + strandat 5517.017 kb on + strand, within AO356_24435at 5517.018 kb on - strand, within AO356_24435at 5517.018 kb on - strand, within AO356_24435at 5517.163 kb on + strand, within AO356_24435at 5517.163 kb on + strand, within AO356_24435at 5517.163 kb on + strand, within AO356_24435at 5517.163 kb on + strand, within AO356_24435at 5517.163 kb on + strand, within AO356_24435at 5517.163 kb on + strand, within AO356_24435at 5517.164 kb on - strand, within AO356_24435at 5517.164 kb on - strand, within AO356_24435at 5517.164 kb on - strand, within AO356_24435at 5517.164 kb on - strand, within AO356_24435at 5517.164 kb on - strand, within AO356_24435at 5517.164 kb on - strand, within AO356_24435at 5517.164 kb on - strand, within AO356_24435at 5517.165 kb on + strand, within AO356_24435at 5517.166 kb on - strand, within AO356_24435at 5517.289 kb on + strand, within AO356_24435at 5517.289 kb on + strand, within AO356_24435at 5517.289 kb on + strand, within AO356_24435at 5517.301 kb on + strand, within AO356_24435at 5517.302 kb on - strand, within AO356_24435at 5517.302 kb on - strand, within AO356_24435at 5517.302 kb on - strand, within AO356_24435at 5517.302 kb on - strand, within AO356_24435at 5517.406 kb on + strand, within AO356_24435at 5517.406 kb on + strand, within AO356_24435at 5517.406 kb on + strand, within AO356_24435at 5517.406 kb on + strand, within AO356_24435at 5517.407 kb on - strand, within AO356_24435at 5517.407 kb on - strand, within AO356_24435at 5517.466 kb on + strand, within AO356_24435at 5517.603 kb on + strandat 5517.603 kb on + strandat 5517.604 kb on - strandat 5517.606 kb on + strandat 5517.656 kb on + strandat 5517.656 kb on + strandat 5517.670 kb on + strandat 5517.671 kb on - strandat 5517.719 kb on - strandat 5517.768 kb on + strandat 5517.768 kb on + strandat 5517.769 kb on - strandat 5518.040 kb on + strand, within AO356_24440at 5518.041 kb on - strand, within AO356_24440at 5518.469 kb on + strand, within AO356_24440at 5518.470 kb on - strand, within AO356_24440at 5518.470 kb on - strand, within AO356_24440at 5518.470 kb on - strand, within AO356_24440at 5518.470 kb on - strand, within AO356_24440

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.0005 mM
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5,516,059 + -0.1
5,516,059 + -0.0
5,516,059 + +0.2
5,516,060 - -1.1
5,516,060 - -0.4
5,516,060 - -1.1
5,516,082 + -1.2
5,516,082 + -0.4
5,516,082 + -1.3
5,516,082 + +0.1
5,516,082 + -0.6
5,516,083 - +1.8
5,516,147 - +0.0
5,516,147 - -1.8
5,516,286 + AO356_24430 0.32 -1.0
5,516,286 + AO356_24430 0.32 -1.2
5,516,286 + AO356_24430 0.32 +0.0
5,516,286 + AO356_24430 0.32 +0.0
5,516,421 - AO356_24430 0.55 -0.9
5,516,535 - AO356_24430 0.74 +0.2
5,516,550 - AO356_24430 0.77 +0.4
5,516,593 + AO356_24430 0.84 -0.4
5,516,594 - AO356_24430 0.84 -0.2
5,516,669 + +1.1
5,516,670 - +0.9
5,516,670 - -0.3
5,516,670 - +0.4
5,516,721 + +1.0
5,516,721 + -0.2
5,516,721 + +0.7
5,516,722 - +0.5
5,516,722 - -1.9
5,516,725 + +1.5
5,516,725 + +0.7
5,516,726 - -0.8
5,516,726 - +0.4
5,516,765 + -0.8
5,517,017 + AO356_24435 0.33 -0.9
5,517,018 - AO356_24435 0.33 +1.1
5,517,018 - AO356_24435 0.33 +0.4
5,517,163 + AO356_24435 0.51 -0.8
5,517,163 + AO356_24435 0.51 -2.0
5,517,163 + AO356_24435 0.51 +1.5
5,517,163 + AO356_24435 0.51 -0.4
5,517,163 + AO356_24435 0.51 +0.3
5,517,163 + AO356_24435 0.51 +0.3
5,517,164 - AO356_24435 0.51 -0.2
5,517,164 - AO356_24435 0.51 -0.3
5,517,164 - AO356_24435 0.51 -0.2
5,517,164 - AO356_24435 0.51 -0.4
5,517,164 - AO356_24435 0.51 +0.7
5,517,164 - AO356_24435 0.51 +0.1
5,517,164 - AO356_24435 0.51 -1.3
5,517,165 + AO356_24435 0.51 +0.1
5,517,166 - AO356_24435 0.51 +0.2
5,517,289 + AO356_24435 0.66 +0.7
5,517,289 + AO356_24435 0.66 -0.9
5,517,289 + AO356_24435 0.66 -0.5
5,517,301 + AO356_24435 0.68 -0.6
5,517,302 - AO356_24435 0.68 +0.2
5,517,302 - AO356_24435 0.68 -1.6
5,517,302 - AO356_24435 0.68 +0.6
5,517,302 - AO356_24435 0.68 +0.5
5,517,406 + AO356_24435 0.80 +0.8
5,517,406 + AO356_24435 0.80 +0.8
5,517,406 + AO356_24435 0.80 +0.9
5,517,406 + AO356_24435 0.80 +0.3
5,517,407 - AO356_24435 0.81 -0.8
5,517,407 - AO356_24435 0.81 -1.2
5,517,466 + AO356_24435 0.88 +0.0
5,517,603 + +0.6
5,517,603 + +0.2
5,517,604 - +0.3
5,517,606 + -0.1
5,517,656 + -0.1
5,517,656 + -0.9
5,517,670 + -1.5
5,517,671 - +0.9
5,517,719 - +1.2
5,517,768 + +0.5
5,517,768 + +1.7
5,517,769 - -0.0
5,518,040 + AO356_24440 0.35 +0.1
5,518,041 - AO356_24440 0.35 +0.4
5,518,469 + AO356_24440 0.79 -1.3
5,518,470 - AO356_24440 0.80 -0.5
5,518,470 - AO356_24440 0.80 -1.3
5,518,470 - AO356_24440 0.80 +0.6
5,518,470 - AO356_24440 0.80 +0.4

Or see this region's nucleotide sequence