Experiment: Lomefloxacin 0.0005 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23950 and AO356_23955 are separated by 308 nucleotides AO356_23955 and AO356_23960 are separated by 122 nucleotides
AO356_23950: AO356_23950 - hypothetical protein, at 5,369,679 to 5,371,022
_23950
AO356_23955: AO356_23955 - GntR family transcriptional regulator, at 5,371,331 to 5,372,062
_23955
AO356_23960: AO356_23960 - MFS transporter, at 5,372,185 to 5,373,474
_23960
Position (kb) 5371
5372
5373 Strain fitness (log2 ratio) -2
-1
0
1 at 5370.558 kb on + strand, within AO356_23950 at 5370.559 kb on - strand, within AO356_23950 at 5370.640 kb on + strand, within AO356_23950 at 5370.640 kb on + strand, within AO356_23950 at 5370.641 kb on - strand, within AO356_23950 at 5370.747 kb on + strand, within AO356_23950 at 5370.747 kb on + strand, within AO356_23950 at 5370.748 kb on - strand, within AO356_23950 at 5370.818 kb on - strand, within AO356_23950 at 5370.847 kb on + strand, within AO356_23950 at 5370.848 kb on - strand, within AO356_23950 at 5370.863 kb on - strand, within AO356_23950 at 5371.062 kb on - strand at 5371.274 kb on + strand at 5371.275 kb on - strand at 5371.278 kb on + strand at 5371.279 kb on - strand at 5371.298 kb on - strand at 5371.324 kb on - strand at 5371.367 kb on + strand at 5371.367 kb on + strand at 5371.367 kb on + strand at 5371.367 kb on + strand at 5371.367 kb on + strand at 5371.368 kb on - strand at 5371.546 kb on + strand, within AO356_23955 at 5371.847 kb on + strand, within AO356_23955 at 5371.847 kb on + strand, within AO356_23955 at 5371.847 kb on + strand, within AO356_23955 at 5371.847 kb on + strand, within AO356_23955 at 5371.847 kb on + strand, within AO356_23955 at 5371.847 kb on + strand, within AO356_23955 at 5371.848 kb on - strand, within AO356_23955 at 5371.877 kb on + strand, within AO356_23955 at 5371.877 kb on + strand, within AO356_23955 at 5371.877 kb on + strand, within AO356_23955 at 5371.986 kb on - strand, within AO356_23955 at 5371.986 kb on - strand, within AO356_23955 at 5372.178 kb on - strand at 5372.273 kb on + strand at 5372.274 kb on - strand at 5372.274 kb on - strand at 5372.587 kb on + strand, within AO356_23960 at 5372.588 kb on - strand, within AO356_23960 at 5372.588 kb on - strand, within AO356_23960 at 5372.668 kb on + strand, within AO356_23960 at 5372.669 kb on - strand, within AO356_23960 at 5372.669 kb on - strand, within AO356_23960 at 5372.906 kb on - strand, within AO356_23960 at 5373.021 kb on - strand, within AO356_23960 at 5373.021 kb on - strand, within AO356_23960
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.0005 mM remove 5,370,558 + AO356_23950 0.65 -1.8 5,370,559 - AO356_23950 0.65 -0.3 5,370,640 + AO356_23950 0.72 +0.2 5,370,640 + AO356_23950 0.72 +0.3 5,370,641 - AO356_23950 0.72 -1.4 5,370,747 + AO356_23950 0.79 +0.1 5,370,747 + AO356_23950 0.79 +0.8 5,370,748 - AO356_23950 0.80 -1.2 5,370,818 - AO356_23950 0.85 -0.1 5,370,847 + AO356_23950 0.87 -1.3 5,370,848 - AO356_23950 0.87 -0.5 5,370,863 - AO356_23950 0.88 -0.8 5,371,062 - +0.1 5,371,274 + +1.4 5,371,275 - +0.2 5,371,278 + -0.1 5,371,279 - -1.4 5,371,298 - -0.7 5,371,324 - -0.0 5,371,367 + -0.2 5,371,367 + -1.3 5,371,367 + +1.0 5,371,367 + -0.3 5,371,367 + -1.1 5,371,368 - +1.1 5,371,546 + AO356_23955 0.29 +1.2 5,371,847 + AO356_23955 0.70 -1.2 5,371,847 + AO356_23955 0.70 +0.4 5,371,847 + AO356_23955 0.70 -0.9 5,371,847 + AO356_23955 0.70 -0.9 5,371,847 + AO356_23955 0.70 -0.5 5,371,847 + AO356_23955 0.70 -2.2 5,371,848 - AO356_23955 0.71 +0.2 5,371,877 + AO356_23955 0.75 +0.7 5,371,877 + AO356_23955 0.75 -0.9 5,371,877 + AO356_23955 0.75 +0.4 5,371,986 - AO356_23955 0.89 -0.1 5,371,986 - AO356_23955 0.89 +0.5 5,372,178 - +0.8 5,372,273 + +0.6 5,372,274 - -0.9 5,372,274 - +0.2 5,372,587 + AO356_23960 0.31 -0.8 5,372,588 - AO356_23960 0.31 -0.4 5,372,588 - AO356_23960 0.31 -0.2 5,372,668 + AO356_23960 0.37 +0.8 5,372,669 - AO356_23960 0.38 -1.3 5,372,669 - AO356_23960 0.38 -0.5 5,372,906 - AO356_23960 0.56 -0.2 5,373,021 - AO356_23960 0.65 +0.1 5,373,021 - AO356_23960 0.65 +0.2
Or see this region's nucleotide sequence