Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_23880

Experiment: Lomefloxacin 0.0005 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_23865 and AO356_23870 are separated by 2 nucleotidesAO356_23870 and AO356_23880 are separated by 441 nucleotidesAO356_23880 and AO356_23885 are separated by 37 nucleotides AO356_23865: AO356_23865 - hypothetical protein, at 5,351,062 to 5,351,481 _23865 AO356_23870: AO356_23870 - YeeE/YedE, at 5,351,484 to 5,351,918 _23870 AO356_23880: AO356_23880 - hypothetical protein, at 5,352,360 to 5,352,839 _23880 AO356_23885: AO356_23885 - carbonate dehydratase, at 5,352,877 to 5,355,624 _23885 Position (kb) 5352 5353Strain fitness (log2 ratio) -2 -1 0 1 2at 5351.398 kb on + strand, within AO356_23865at 5351.398 kb on + strand, within AO356_23865at 5351.398 kb on + strand, within AO356_23865at 5351.398 kb on + strand, within AO356_23865at 5351.399 kb on - strand, within AO356_23865at 5351.514 kb on + strandat 5351.515 kb on - strandat 5351.867 kb on + strand, within AO356_23870at 5351.895 kb on - strandat 5351.947 kb on - strandat 5351.977 kb on + strandat 5352.222 kb on - strandat 5352.222 kb on - strandat 5352.299 kb on + strandat 5352.336 kb on + strandat 5352.361 kb on + strandat 5352.433 kb on + strand, within AO356_23880at 5352.433 kb on + strand, within AO356_23880at 5352.433 kb on + strand, within AO356_23880at 5352.433 kb on + strand, within AO356_23880at 5352.433 kb on + strand, within AO356_23880at 5352.434 kb on - strand, within AO356_23880at 5352.434 kb on - strand, within AO356_23880at 5352.434 kb on - strand, within AO356_23880at 5352.434 kb on - strand, within AO356_23880at 5352.434 kb on - strand, within AO356_23880at 5352.434 kb on - strand, within AO356_23880at 5352.448 kb on + strand, within AO356_23880at 5352.448 kb on + strand, within AO356_23880at 5352.448 kb on + strand, within AO356_23880at 5352.448 kb on + strand, within AO356_23880at 5352.449 kb on - strand, within AO356_23880at 5352.449 kb on - strand, within AO356_23880at 5352.449 kb on - strand, within AO356_23880at 5352.488 kb on - strand, within AO356_23880at 5352.488 kb on - strand, within AO356_23880at 5352.536 kb on + strand, within AO356_23880at 5352.536 kb on + strand, within AO356_23880at 5352.537 kb on - strand, within AO356_23880at 5352.537 kb on - strand, within AO356_23880at 5352.537 kb on - strand, within AO356_23880at 5352.537 kb on - strand, within AO356_23880at 5352.537 kb on - strand, within AO356_23880at 5352.782 kb on + strand, within AO356_23880at 5352.782 kb on + strand, within AO356_23880at 5352.783 kb on - strand, within AO356_23880at 5353.223 kb on + strand, within AO356_23885at 5353.227 kb on + strand, within AO356_23885at 5353.227 kb on + strand, within AO356_23885at 5353.228 kb on - strand, within AO356_23885at 5353.228 kb on - strand, within AO356_23885at 5353.228 kb on - strand, within AO356_23885at 5353.228 kb on - strand, within AO356_23885at 5353.228 kb on - strand, within AO356_23885at 5353.275 kb on + strand, within AO356_23885at 5353.276 kb on - strand, within AO356_23885at 5353.383 kb on + strand, within AO356_23885at 5353.434 kb on + strand, within AO356_23885at 5353.434 kb on + strand, within AO356_23885at 5353.434 kb on + strand, within AO356_23885at 5353.435 kb on - strand, within AO356_23885at 5353.435 kb on - strand, within AO356_23885at 5353.435 kb on - strand, within AO356_23885at 5353.435 kb on - strand, within AO356_23885at 5353.523 kb on + strand, within AO356_23885at 5353.558 kb on - strand, within AO356_23885at 5353.737 kb on + strand, within AO356_23885at 5353.737 kb on + strand, within AO356_23885at 5353.737 kb on + strand, within AO356_23885at 5353.737 kb on + strand, within AO356_23885at 5353.737 kb on + strand, within AO356_23885at 5353.737 kb on + strand, within AO356_23885at 5353.738 kb on - strand, within AO356_23885at 5353.738 kb on - strand, within AO356_23885at 5353.832 kb on - strand, within AO356_23885at 5353.832 kb on - strand, within AO356_23885

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.0005 mM
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5,351,398 + AO356_23865 0.80 -0.8
5,351,398 + AO356_23865 0.80 -1.1
5,351,398 + AO356_23865 0.80 -1.8
5,351,398 + AO356_23865 0.80 +0.1
5,351,399 - AO356_23865 0.80 -1.1
5,351,514 + +0.2
5,351,515 - -1.5
5,351,867 + AO356_23870 0.88 -0.5
5,351,895 - -1.3
5,351,947 - -1.5
5,351,977 + +0.2
5,352,222 - -1.3
5,352,222 - -0.6
5,352,299 + +2.0
5,352,336 + -1.2
5,352,361 + +0.4
5,352,433 + AO356_23880 0.15 -0.8
5,352,433 + AO356_23880 0.15 +1.6
5,352,433 + AO356_23880 0.15 -2.4
5,352,433 + AO356_23880 0.15 -0.8
5,352,433 + AO356_23880 0.15 -1.0
5,352,434 - AO356_23880 0.15 -1.8
5,352,434 - AO356_23880 0.15 -0.4
5,352,434 - AO356_23880 0.15 -0.7
5,352,434 - AO356_23880 0.15 +1.4
5,352,434 - AO356_23880 0.15 -1.3
5,352,434 - AO356_23880 0.15 -0.8
5,352,448 + AO356_23880 0.18 -0.0
5,352,448 + AO356_23880 0.18 -1.3
5,352,448 + AO356_23880 0.18 -0.8
5,352,448 + AO356_23880 0.18 -0.6
5,352,449 - AO356_23880 0.19 +0.9
5,352,449 - AO356_23880 0.19 -0.5
5,352,449 - AO356_23880 0.19 +0.8
5,352,488 - AO356_23880 0.27 -1.8
5,352,488 - AO356_23880 0.27 +0.2
5,352,536 + AO356_23880 0.37 +0.7
5,352,536 + AO356_23880 0.37 -0.3
5,352,537 - AO356_23880 0.37 +0.1
5,352,537 - AO356_23880 0.37 +0.3
5,352,537 - AO356_23880 0.37 -1.3
5,352,537 - AO356_23880 0.37 +1.2
5,352,537 - AO356_23880 0.37 -0.6
5,352,782 + AO356_23880 0.88 +1.1
5,352,782 + AO356_23880 0.88 +0.7
5,352,783 - AO356_23880 0.88 +0.4
5,353,223 + AO356_23885 0.13 -0.5
5,353,227 + AO356_23885 0.13 +0.3
5,353,227 + AO356_23885 0.13 -0.8
5,353,228 - AO356_23885 0.13 -1.2
5,353,228 - AO356_23885 0.13 -0.1
5,353,228 - AO356_23885 0.13 -1.6
5,353,228 - AO356_23885 0.13 -0.8
5,353,228 - AO356_23885 0.13 +0.8
5,353,275 + AO356_23885 0.14 -0.2
5,353,276 - AO356_23885 0.15 -1.3
5,353,383 + AO356_23885 0.18 +0.0
5,353,434 + AO356_23885 0.20 +0.1
5,353,434 + AO356_23885 0.20 +1.1
5,353,434 + AO356_23885 0.20 -0.1
5,353,435 - AO356_23885 0.20 +0.6
5,353,435 - AO356_23885 0.20 -0.0
5,353,435 - AO356_23885 0.20 -0.3
5,353,435 - AO356_23885 0.20 -0.8
5,353,523 + AO356_23885 0.24 +0.4
5,353,558 - AO356_23885 0.25 -0.5
5,353,737 + AO356_23885 0.31 +0.9
5,353,737 + AO356_23885 0.31 +0.3
5,353,737 + AO356_23885 0.31 +0.1
5,353,737 + AO356_23885 0.31 -0.1
5,353,737 + AO356_23885 0.31 -0.2
5,353,737 + AO356_23885 0.31 +0.4
5,353,738 - AO356_23885 0.31 -1.8
5,353,738 - AO356_23885 0.31 -0.3
5,353,832 - AO356_23885 0.35 -0.8
5,353,832 - AO356_23885 0.35 +0.4

Or see this region's nucleotide sequence