Experiment: Lomefloxacin 0.0005 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22920 and AO356_22925 are separated by 570 nucleotides AO356_22925 and AO356_22930 are separated by 5 nucleotides
AO356_22920: AO356_22920 - nicotinamidase, at 5,117,972 to 5,118,625
_22920
AO356_22925: AO356_22925 - histidine kinase, at 5,119,196 to 5,121,274
_22925
AO356_22930: AO356_22930 - DNA alkylation repair protein, at 5,121,280 to 5,122,383
_22930
Position (kb) 5119
5120
5121
5122 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5118.255 kb on + strand, within AO356_22920 at 5118.256 kb on - strand, within AO356_22920 at 5118.256 kb on - strand, within AO356_22920 at 5118.351 kb on - strand, within AO356_22920 at 5118.351 kb on - strand, within AO356_22920 at 5118.471 kb on - strand, within AO356_22920 at 5118.471 kb on - strand, within AO356_22920 at 5118.572 kb on + strand at 5118.572 kb on + strand at 5118.572 kb on + strand at 5118.573 kb on - strand at 5118.660 kb on + strand at 5118.661 kb on - strand at 5118.745 kb on + strand at 5118.745 kb on + strand at 5118.882 kb on - strand at 5118.882 kb on - strand at 5119.076 kb on + strand at 5119.182 kb on + strand at 5119.183 kb on - strand at 5119.211 kb on + strand at 5119.262 kb on + strand at 5119.262 kb on + strand at 5119.262 kb on + strand at 5119.263 kb on - strand at 5119.289 kb on - strand at 5119.416 kb on - strand, within AO356_22925 at 5119.562 kb on + strand, within AO356_22925 at 5119.562 kb on + strand, within AO356_22925 at 5119.562 kb on + strand, within AO356_22925 at 5119.563 kb on - strand, within AO356_22925 at 5119.563 kb on - strand, within AO356_22925 at 5119.563 kb on - strand, within AO356_22925 at 5119.763 kb on + strand, within AO356_22925 at 5120.420 kb on + strand, within AO356_22925 at 5120.420 kb on + strand, within AO356_22925 at 5120.421 kb on - strand, within AO356_22925 at 5120.421 kb on - strand, within AO356_22925 at 5120.421 kb on - strand, within AO356_22925 at 5120.421 kb on - strand, within AO356_22925 at 5120.553 kb on - strand, within AO356_22925 at 5120.739 kb on - strand, within AO356_22925 at 5120.739 kb on - strand, within AO356_22925 at 5120.753 kb on - strand, within AO356_22925 at 5120.842 kb on + strand, within AO356_22925 at 5120.842 kb on + strand, within AO356_22925 at 5120.843 kb on - strand, within AO356_22925 at 5120.843 kb on - strand, within AO356_22925 at 5120.993 kb on + strand, within AO356_22925 at 5120.993 kb on + strand, within AO356_22925 at 5120.993 kb on + strand, within AO356_22925 at 5121.197 kb on + strand at 5121.197 kb on + strand at 5121.384 kb on + strand at 5121.384 kb on + strand at 5121.384 kb on + strand at 5121.385 kb on - strand at 5121.385 kb on - strand at 5121.673 kb on - strand, within AO356_22930 at 5121.673 kb on - strand, within AO356_22930 at 5121.673 kb on - strand, within AO356_22930 at 5121.803 kb on + strand, within AO356_22930 at 5121.803 kb on + strand, within AO356_22930 at 5121.803 kb on + strand, within AO356_22930 at 5121.803 kb on + strand, within AO356_22930 at 5121.804 kb on - strand, within AO356_22930 at 5121.804 kb on - strand, within AO356_22930 at 5122.040 kb on + strand, within AO356_22930 at 5122.041 kb on - strand, within AO356_22930 at 5122.083 kb on - strand, within AO356_22930 at 5122.094 kb on + strand, within AO356_22930 at 5122.173 kb on - strand, within AO356_22930
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.0005 mM remove 5,118,255 + AO356_22920 0.43 +0.3 5,118,256 - AO356_22920 0.43 -1.8 5,118,256 - AO356_22920 0.43 -1.4 5,118,351 - AO356_22920 0.58 +0.5 5,118,351 - AO356_22920 0.58 +2.0 5,118,471 - AO356_22920 0.76 -0.8 5,118,471 - AO356_22920 0.76 +2.3 5,118,572 + +1.1 5,118,572 + -0.2 5,118,572 + -1.7 5,118,573 - +0.6 5,118,660 + -1.2 5,118,661 - -0.2 5,118,745 + -1.9 5,118,745 + -0.2 5,118,882 - +0.3 5,118,882 - +1.2 5,119,076 + -0.8 5,119,182 + +0.2 5,119,183 - +0.2 5,119,211 + -1.4 5,119,262 + +0.7 5,119,262 + -2.0 5,119,262 + +0.0 5,119,263 - +0.1 5,119,289 - -0.6 5,119,416 - AO356_22925 0.11 -2.1 5,119,562 + AO356_22925 0.18 -1.1 5,119,562 + AO356_22925 0.18 +0.4 5,119,562 + AO356_22925 0.18 +0.5 5,119,563 - AO356_22925 0.18 -0.7 5,119,563 - AO356_22925 0.18 -1.8 5,119,563 - AO356_22925 0.18 -0.3 5,119,763 + AO356_22925 0.27 +0.0 5,120,420 + AO356_22925 0.59 +0.6 5,120,420 + AO356_22925 0.59 +1.3 5,120,421 - AO356_22925 0.59 -0.5 5,120,421 - AO356_22925 0.59 -0.3 5,120,421 - AO356_22925 0.59 -2.0 5,120,421 - AO356_22925 0.59 -1.3 5,120,553 - AO356_22925 0.65 +0.9 5,120,739 - AO356_22925 0.74 +0.5 5,120,739 - AO356_22925 0.74 +0.1 5,120,753 - AO356_22925 0.75 -1.2 5,120,842 + AO356_22925 0.79 -0.8 5,120,842 + AO356_22925 0.79 -2.5 5,120,843 - AO356_22925 0.79 +0.3 5,120,843 - AO356_22925 0.79 -0.6 5,120,993 + AO356_22925 0.86 +0.4 5,120,993 + AO356_22925 0.86 +0.0 5,120,993 + AO356_22925 0.86 -1.0 5,121,197 + +0.1 5,121,197 + -0.6 5,121,384 + +0.4 5,121,384 + +1.8 5,121,384 + +3.4 5,121,385 - -1.7 5,121,385 - +0.8 5,121,673 - AO356_22930 0.36 -1.4 5,121,673 - AO356_22930 0.36 +0.7 5,121,673 - AO356_22930 0.36 -1.7 5,121,803 + AO356_22930 0.47 -0.6 5,121,803 + AO356_22930 0.47 +0.3 5,121,803 + AO356_22930 0.47 -1.4 5,121,803 + AO356_22930 0.47 -0.6 5,121,804 - AO356_22930 0.47 -0.2 5,121,804 - AO356_22930 0.47 -0.8 5,122,040 + AO356_22930 0.69 -0.2 5,122,041 - AO356_22930 0.69 -0.8 5,122,083 - AO356_22930 0.73 +0.5 5,122,094 + AO356_22930 0.74 +0.2 5,122,173 - AO356_22930 0.81 -0.1
Or see this region's nucleotide sequence