Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21385

Experiment: Lomefloxacin 0.0005 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21380 and AO356_21385 are separated by 119 nucleotidesAO356_21385 and AO356_21390 are separated by 62 nucleotides AO356_21380: AO356_21380 - tRNA-dihydrouridine synthase C, at 4,791,934 to 4,792,893 _21380 AO356_21385: AO356_21385 - heat-shock protein, at 4,793,013 to 4,793,465 _21385 AO356_21390: AO356_21390 - histidine kinase, at 4,793,528 to 4,796,806 _21390 Position (kb) 4793 4794Strain fitness (log2 ratio) -1 0 1 2 3at 4792.066 kb on + strand, within AO356_21380at 4792.067 kb on - strand, within AO356_21380at 4792.067 kb on - strand, within AO356_21380at 4792.074 kb on + strand, within AO356_21380at 4792.074 kb on + strand, within AO356_21380at 4792.459 kb on + strand, within AO356_21380at 4792.459 kb on + strand, within AO356_21380at 4792.459 kb on + strand, within AO356_21380at 4792.459 kb on + strand, within AO356_21380at 4792.460 kb on - strand, within AO356_21380at 4792.862 kb on + strandat 4792.862 kb on + strandat 4792.863 kb on - strandat 4792.863 kb on - strandat 4792.863 kb on - strandat 4792.936 kb on + strandat 4792.936 kb on + strandat 4792.936 kb on + strandat 4792.941 kb on - strandat 4792.941 kb on - strandat 4792.941 kb on - strandat 4793.018 kb on + strandat 4793.018 kb on + strandat 4793.057 kb on - strandat 4793.118 kb on + strand, within AO356_21385at 4793.118 kb on + strand, within AO356_21385at 4793.118 kb on + strand, within AO356_21385at 4793.119 kb on - strand, within AO356_21385at 4793.119 kb on - strand, within AO356_21385at 4793.127 kb on + strand, within AO356_21385at 4793.127 kb on + strand, within AO356_21385at 4793.127 kb on + strand, within AO356_21385at 4793.128 kb on - strand, within AO356_21385at 4793.128 kb on - strand, within AO356_21385at 4793.128 kb on - strand, within AO356_21385at 4793.128 kb on - strand, within AO356_21385at 4793.333 kb on + strand, within AO356_21385at 4793.492 kb on + strandat 4793.492 kb on + strandat 4793.509 kb on + strandat 4793.581 kb on - strandat 4793.589 kb on + strandat 4793.590 kb on - strandat 4793.657 kb on + strandat 4793.784 kb on + strandat 4793.785 kb on - strandat 4793.785 kb on - strandat 4793.894 kb on - strand, within AO356_21390at 4794.366 kb on + strand, within AO356_21390at 4794.366 kb on + strand, within AO356_21390

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.0005 mM
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4,792,066 + AO356_21380 0.14 +0.7
4,792,067 - AO356_21380 0.14 +0.7
4,792,067 - AO356_21380 0.14 +0.6
4,792,074 + AO356_21380 0.15 -1.0
4,792,074 + AO356_21380 0.15 +0.3
4,792,459 + AO356_21380 0.55 +0.6
4,792,459 + AO356_21380 0.55 -0.3
4,792,459 + AO356_21380 0.55 -1.3
4,792,459 + AO356_21380 0.55 +2.1
4,792,460 - AO356_21380 0.55 +0.6
4,792,862 + -0.6
4,792,862 + +0.1
4,792,863 - +0.1
4,792,863 - +0.5
4,792,863 - +0.3
4,792,936 + -0.5
4,792,936 + -0.3
4,792,936 + +0.8
4,792,941 - +1.4
4,792,941 - -0.1
4,792,941 - +3.7
4,793,018 + +0.3
4,793,018 + +1.1
4,793,057 - -0.9
4,793,118 + AO356_21385 0.23 -0.6
4,793,118 + AO356_21385 0.23 +1.1
4,793,118 + AO356_21385 0.23 -1.4
4,793,119 - AO356_21385 0.23 +0.1
4,793,119 - AO356_21385 0.23 -0.4
4,793,127 + AO356_21385 0.25 -0.4
4,793,127 + AO356_21385 0.25 +0.6
4,793,127 + AO356_21385 0.25 +0.4
4,793,128 - AO356_21385 0.25 -0.6
4,793,128 - AO356_21385 0.25 +0.4
4,793,128 - AO356_21385 0.25 +0.9
4,793,128 - AO356_21385 0.25 -0.3
4,793,333 + AO356_21385 0.71 +0.3
4,793,492 + +0.0
4,793,492 + -1.2
4,793,509 + -0.5
4,793,581 - +0.7
4,793,589 + +0.3
4,793,590 - -0.8
4,793,657 + -1.0
4,793,784 + +0.2
4,793,785 - -1.0
4,793,785 - +0.4
4,793,894 - AO356_21390 0.11 -0.7
4,794,366 + AO356_21390 0.26 -1.1
4,794,366 + AO356_21390 0.26 +0.9

Or see this region's nucleotide sequence