Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21365

Experiment: Lomefloxacin 0.0005 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21340 and AO356_21345 are separated by 146 nucleotidesAO356_21345 and AO356_21350 are separated by 79 nucleotidesAO356_21350 and AO356_21355 are separated by 53 nucleotidesAO356_21355 and AO356_21360 are separated by 75 nucleotidesAO356_21360 and AO356_21365 are separated by 181 nucleotidesAO356_21365 and AO356_21370 are separated by 28 nucleotidesAO356_21370 and AO356_21375 are separated by 85 nucleotides AO356_21340: AO356_21340 - glutamate--tRNA ligase, at 4,787,295 to 4,788,776 _21340 AO356_21345: AO356_21345 - tRNA-Ala, at 4,788,923 to 4,788,998 _21345 AO356_21350: AO356_21350 - tRNA-Glu, at 4,789,078 to 4,789,153 _21350 AO356_21355: AO356_21355 - tRNA-Ala, at 4,789,207 to 4,789,282 _21355 AO356_21360: AO356_21360 - tRNA-Glu, at 4,789,358 to 4,789,433 _21360 AO356_21365: AO356_21365 - TetR family transcriptional regulator, at 4,789,615 to 4,790,154 _21365 AO356_21370: AO356_21370 - hydrolase, at 4,790,183 to 4,791,016 _21370 AO356_21375: AO356_21375 - 4-hydroxybenzoyl-CoA thioesterase, at 4,791,102 to 4,791,551 _21375 Position (kb) 4789 4790 4791Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4788.774 kb on + strandat 4788.856 kb on - strandat 4788.988 kb on + strand, within AO356_21345at 4789.063 kb on + strandat 4789.063 kb on + strandat 4789.063 kb on + strandat 4789.063 kb on + strandat 4789.063 kb on + strandat 4789.063 kb on + strandat 4789.063 kb on + strandat 4789.063 kb on + strandat 4789.063 kb on + strandat 4789.063 kb on + strandat 4789.065 kb on + strandat 4789.065 kb on + strandat 4789.065 kb on + strandat 4789.065 kb on + strandat 4789.158 kb on + strandat 4789.272 kb on + strand, within AO356_21355at 4789.285 kb on + strandat 4789.346 kb on + strandat 4789.346 kb on + strandat 4789.346 kb on + strandat 4789.457 kb on + strandat 4789.747 kb on + strand, within AO356_21365at 4789.748 kb on - strand, within AO356_21365at 4789.882 kb on + strand, within AO356_21365at 4789.882 kb on + strand, within AO356_21365at 4789.882 kb on + strand, within AO356_21365at 4789.883 kb on - strand, within AO356_21365at 4789.883 kb on - strand, within AO356_21365at 4789.883 kb on - strand, within AO356_21365at 4789.992 kb on + strand, within AO356_21365at 4789.992 kb on + strand, within AO356_21365at 4790.202 kb on + strandat 4790.206 kb on + strandat 4790.206 kb on + strandat 4790.206 kb on + strandat 4790.206 kb on + strandat 4790.206 kb on + strandat 4790.206 kb on + strandat 4790.206 kb on + strandat 4790.206 kb on + strandat 4790.206 kb on + strandat 4790.206 kb on + strandat 4790.207 kb on - strandat 4790.207 kb on - strandat 4790.207 kb on - strandat 4790.207 kb on - strandat 4790.207 kb on - strandat 4790.335 kb on + strand, within AO356_21370at 4790.336 kb on - strand, within AO356_21370at 4790.336 kb on - strand, within AO356_21370at 4790.462 kb on + strand, within AO356_21370at 4790.802 kb on - strand, within AO356_21370at 4790.970 kb on + strandat 4791.055 kb on + strandat 4791.055 kb on + strandat 4791.055 kb on + strandat 4791.055 kb on + strandat 4791.056 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.0005 mM
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4,788,774 + +0.8
4,788,856 - +0.7
4,788,988 + AO356_21345 0.86 -0.3
4,789,063 + +2.7
4,789,063 + +2.6
4,789,063 + +2.2
4,789,063 + +1.3
4,789,063 + +1.0
4,789,063 + +1.8
4,789,063 + +1.7
4,789,063 + +2.3
4,789,063 + +2.4
4,789,063 + +2.2
4,789,065 + +2.3
4,789,065 + +3.1
4,789,065 + +2.0
4,789,065 + +1.1
4,789,158 + +0.9
4,789,272 + AO356_21355 0.86 -2.0
4,789,285 + -0.0
4,789,346 + -1.2
4,789,346 + +2.8
4,789,346 + +1.2
4,789,457 + -0.5
4,789,747 + AO356_21365 0.24 -0.4
4,789,748 - AO356_21365 0.25 -0.2
4,789,882 + AO356_21365 0.49 -0.2
4,789,882 + AO356_21365 0.49 -0.1
4,789,882 + AO356_21365 0.49 -0.4
4,789,883 - AO356_21365 0.50 +0.7
4,789,883 - AO356_21365 0.50 +1.4
4,789,883 - AO356_21365 0.50 +0.3
4,789,992 + AO356_21365 0.70 +0.6
4,789,992 + AO356_21365 0.70 -1.4
4,790,202 + -0.7
4,790,206 + -0.3
4,790,206 + -1.4
4,790,206 + -0.7
4,790,206 + +0.8
4,790,206 + -1.8
4,790,206 + +0.1
4,790,206 + +1.1
4,790,206 + +0.8
4,790,206 + -1.2
4,790,206 + +0.2
4,790,207 - +0.9
4,790,207 - -0.3
4,790,207 - +1.9
4,790,207 - -1.1
4,790,207 - +0.3
4,790,335 + AO356_21370 0.18 -0.9
4,790,336 - AO356_21370 0.18 +0.9
4,790,336 - AO356_21370 0.18 -0.4
4,790,462 + AO356_21370 0.33 +0.6
4,790,802 - AO356_21370 0.74 -0.4
4,790,970 + +0.9
4,791,055 + -0.6
4,791,055 + +1.4
4,791,055 + +1.9
4,791,055 + -0.4
4,791,056 - -0.2

Or see this region's nucleotide sequence