Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21030

Experiment: Lomefloxacin 0.0005 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21025 and AO356_21030 are separated by 203 nucleotidesAO356_21030 and AO356_21035 are separated by 26 nucleotidesAO356_21035 and AO356_21040 are separated by 72 nucleotides AO356_21025: AO356_21025 - AraC family transcriptional regulator, at 4,678,147 to 4,679,094 _21025 AO356_21030: AO356_21030 - oxidoreductase, at 4,679,298 to 4,680,035 _21030 AO356_21035: AO356_21035 - hypothetical protein, at 4,680,062 to 4,680,319 _21035 AO356_21040: AO356_21040 - dimethylglycine dehydrogenase, at 4,680,392 to 4,681,078 _21040 Position (kb) 4679 4680 4681Strain fitness (log2 ratio) -2 -1 0 1 2at 4678.448 kb on + strand, within AO356_21025at 4678.770 kb on - strand, within AO356_21025at 4678.835 kb on + strand, within AO356_21025at 4678.835 kb on + strand, within AO356_21025at 4678.835 kb on + strand, within AO356_21025at 4678.835 kb on + strand, within AO356_21025at 4678.836 kb on - strand, within AO356_21025at 4678.836 kb on - strand, within AO356_21025at 4678.850 kb on + strand, within AO356_21025at 4678.851 kb on - strand, within AO356_21025at 4678.851 kb on - strand, within AO356_21025at 4678.851 kb on - strand, within AO356_21025at 4678.851 kb on - strand, within AO356_21025at 4678.851 kb on - strand, within AO356_21025at 4678.851 kb on - strand, within AO356_21025at 4678.856 kb on + strand, within AO356_21025at 4678.856 kb on + strand, within AO356_21025at 4678.856 kb on + strand, within AO356_21025at 4678.856 kb on + strand, within AO356_21025at 4678.857 kb on - strand, within AO356_21025at 4678.857 kb on - strand, within AO356_21025at 4678.857 kb on - strand, within AO356_21025at 4678.857 kb on - strand, within AO356_21025at 4678.857 kb on - strand, within AO356_21025at 4678.857 kb on - strand, within AO356_21025at 4678.857 kb on - strand, within AO356_21025at 4679.086 kb on + strandat 4679.124 kb on - strandat 4679.136 kb on + strandat 4679.137 kb on - strandat 4679.173 kb on + strandat 4679.173 kb on + strandat 4679.174 kb on - strandat 4679.180 kb on - strandat 4679.237 kb on + strandat 4679.275 kb on + strandat 4679.276 kb on - strandat 4679.276 kb on - strandat 4679.660 kb on + strand, within AO356_21030at 4679.760 kb on + strand, within AO356_21030at 4679.775 kb on + strand, within AO356_21030at 4679.775 kb on + strand, within AO356_21030at 4679.776 kb on - strand, within AO356_21030at 4679.989 kb on + strandat 4679.989 kb on + strandat 4680.088 kb on + strand, within AO356_21035at 4680.155 kb on + strand, within AO356_21035at 4680.155 kb on + strand, within AO356_21035at 4680.155 kb on + strand, within AO356_21035at 4680.156 kb on - strand, within AO356_21035at 4680.174 kb on + strand, within AO356_21035at 4680.175 kb on - strand, within AO356_21035at 4680.175 kb on - strand, within AO356_21035at 4680.188 kb on + strand, within AO356_21035at 4680.189 kb on - strand, within AO356_21035at 4680.201 kb on - strand, within AO356_21035at 4680.207 kb on + strand, within AO356_21035at 4680.228 kb on - strand, within AO356_21035at 4680.228 kb on - strand, within AO356_21035at 4680.281 kb on + strand, within AO356_21035at 4680.302 kb on + strandat 4680.303 kb on - strandat 4680.303 kb on - strandat 4680.303 kb on - strandat 4680.303 kb on - strandat 4680.538 kb on - strand, within AO356_21040at 4680.660 kb on - strand, within AO356_21040at 4680.709 kb on - strand, within AO356_21040at 4680.787 kb on + strand, within AO356_21040at 4680.787 kb on + strand, within AO356_21040at 4680.788 kb on - strand, within AO356_21040at 4680.788 kb on - strand, within AO356_21040at 4680.788 kb on - strand, within AO356_21040at 4680.792 kb on + strand, within AO356_21040at 4680.792 kb on + strand, within AO356_21040at 4680.793 kb on - strand, within AO356_21040at 4681.014 kb on + strandat 4681.014 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.0005 mM
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4,678,448 + AO356_21025 0.32 -1.3
4,678,770 - AO356_21025 0.66 -1.2
4,678,835 + AO356_21025 0.73 -0.0
4,678,835 + AO356_21025 0.73 -1.6
4,678,835 + AO356_21025 0.73 +0.6
4,678,835 + AO356_21025 0.73 -0.0
4,678,836 - AO356_21025 0.73 -2.4
4,678,836 - AO356_21025 0.73 +0.3
4,678,850 + AO356_21025 0.74 +1.4
4,678,851 - AO356_21025 0.74 -1.1
4,678,851 - AO356_21025 0.74 +0.0
4,678,851 - AO356_21025 0.74 +0.7
4,678,851 - AO356_21025 0.74 -0.6
4,678,851 - AO356_21025 0.74 -0.8
4,678,851 - AO356_21025 0.74 -0.4
4,678,856 + AO356_21025 0.75 -0.5
4,678,856 + AO356_21025 0.75 -2.6
4,678,856 + AO356_21025 0.75 +1.4
4,678,856 + AO356_21025 0.75 +0.4
4,678,857 - AO356_21025 0.75 -0.3
4,678,857 - AO356_21025 0.75 -0.8
4,678,857 - AO356_21025 0.75 -0.3
4,678,857 - AO356_21025 0.75 +0.6
4,678,857 - AO356_21025 0.75 +1.2
4,678,857 - AO356_21025 0.75 -1.8
4,678,857 - AO356_21025 0.75 -0.4
4,679,086 + -0.5
4,679,124 - -0.2
4,679,136 + +0.8
4,679,137 - +1.4
4,679,173 + -0.3
4,679,173 + +2.6
4,679,174 - +0.6
4,679,180 - -0.1
4,679,237 + -1.6
4,679,275 + +0.6
4,679,276 - +0.4
4,679,276 - -1.7
4,679,660 + AO356_21030 0.49 -0.5
4,679,760 + AO356_21030 0.63 +0.4
4,679,775 + AO356_21030 0.65 -1.1
4,679,775 + AO356_21030 0.65 -0.5
4,679,776 - AO356_21030 0.65 -0.9
4,679,989 + +0.2
4,679,989 + -0.3
4,680,088 + AO356_21035 0.10 +0.8
4,680,155 + AO356_21035 0.36 -1.8
4,680,155 + AO356_21035 0.36 +0.4
4,680,155 + AO356_21035 0.36 -0.3
4,680,156 - AO356_21035 0.36 -1.2
4,680,174 + AO356_21035 0.43 -2.0
4,680,175 - AO356_21035 0.44 +0.7
4,680,175 - AO356_21035 0.44 +0.6
4,680,188 + AO356_21035 0.49 -1.3
4,680,189 - AO356_21035 0.49 +0.2
4,680,201 - AO356_21035 0.54 +0.8
4,680,207 + AO356_21035 0.56 -0.4
4,680,228 - AO356_21035 0.64 -1.9
4,680,228 - AO356_21035 0.64 -0.8
4,680,281 + AO356_21035 0.85 +0.6
4,680,302 + -1.6
4,680,303 - +0.4
4,680,303 - +0.5
4,680,303 - -0.7
4,680,303 - +0.3
4,680,538 - AO356_21040 0.21 -0.5
4,680,660 - AO356_21040 0.39 +1.0
4,680,709 - AO356_21040 0.46 +1.2
4,680,787 + AO356_21040 0.57 -1.9
4,680,787 + AO356_21040 0.57 +0.4
4,680,788 - AO356_21040 0.58 -1.1
4,680,788 - AO356_21040 0.58 -0.8
4,680,788 - AO356_21040 0.58 +1.3
4,680,792 + AO356_21040 0.58 +0.5
4,680,792 + AO356_21040 0.58 -0.0
4,680,793 - AO356_21040 0.58 -1.5
4,681,014 + +0.5
4,681,014 + +0.4

Or see this region's nucleotide sequence