Experiment: Lomefloxacin 0.0005 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_18500 and AO356_18505 are separated by 0 nucleotides AO356_18505 and AO356_18510 are separated by 11 nucleotides AO356_18510 and AO356_18515 are separated by 298 nucleotides
AO356_18500: AO356_18500 - hypothetical protein, at 4,162,642 to 4,163,271
_18500
AO356_18505: AO356_18505 - chromosome segregation protein ScpA, at 4,163,272 to 4,164,102
_18505
AO356_18510: AO356_18510 - segregation and condensation protein B, at 4,164,114 to 4,165,064
_18510
AO356_18515: AO356_18515 - pseudouridine synthase, at 4,165,363 to 4,166,598
_18515
Position (kb) 4164
4165
4166 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4163.114 kb on - strand, within AO356_18500 at 4163.129 kb on + strand, within AO356_18500 at 4163.129 kb on + strand, within AO356_18500 at 4163.130 kb on - strand, within AO356_18500 at 4163.350 kb on + strand at 4163.351 kb on - strand at 4163.351 kb on - strand at 4163.386 kb on + strand, within AO356_18505 at 4163.386 kb on + strand, within AO356_18505 at 4163.386 kb on + strand, within AO356_18505 at 4163.387 kb on - strand, within AO356_18505 at 4163.387 kb on - strand, within AO356_18505 at 4163.387 kb on - strand, within AO356_18505 at 4163.453 kb on - strand, within AO356_18505 at 4163.479 kb on - strand, within AO356_18505 at 4163.515 kb on + strand, within AO356_18505 at 4163.515 kb on + strand, within AO356_18505 at 4163.515 kb on + strand, within AO356_18505 at 4163.516 kb on - strand, within AO356_18505 at 4163.524 kb on + strand, within AO356_18505 at 4163.547 kb on - strand, within AO356_18505 at 4163.570 kb on - strand, within AO356_18505 at 4163.570 kb on - strand, within AO356_18505 at 4163.570 kb on - strand, within AO356_18505 at 4163.689 kb on + strand, within AO356_18505 at 4163.689 kb on + strand, within AO356_18505 at 4163.690 kb on - strand, within AO356_18505 at 4163.807 kb on + strand, within AO356_18505 at 4163.807 kb on + strand, within AO356_18505 at 4163.807 kb on + strand, within AO356_18505 at 4163.807 kb on + strand, within AO356_18505 at 4163.807 kb on + strand, within AO356_18505 at 4163.807 kb on + strand, within AO356_18505 at 4163.807 kb on + strand, within AO356_18505 at 4163.808 kb on - strand, within AO356_18505 at 4163.859 kb on + strand, within AO356_18505 at 4163.860 kb on - strand, within AO356_18505 at 4164.388 kb on - strand, within AO356_18510 at 4164.388 kb on - strand, within AO356_18510 at 4164.463 kb on + strand, within AO356_18510 at 4164.463 kb on + strand, within AO356_18510 at 4164.464 kb on - strand, within AO356_18510 at 4164.464 kb on - strand, within AO356_18510 at 4164.488 kb on + strand, within AO356_18510 at 4165.065 kb on + strand at 4165.065 kb on + strand at 4165.066 kb on - strand at 4165.066 kb on - strand at 4165.066 kb on - strand at 4165.066 kb on - strand at 4165.066 kb on - strand at 4165.066 kb on - strand at 4165.237 kb on + strand at 4165.238 kb on - strand at 4165.269 kb on + strand at 4165.269 kb on + strand at 4165.270 kb on - strand at 4165.270 kb on - strand at 4165.270 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.0005 mM remove 4,163,114 - AO356_18500 0.75 +0.0 4,163,129 + AO356_18500 0.77 +0.1 4,163,129 + AO356_18500 0.77 +0.5 4,163,130 - AO356_18500 0.77 -1.9 4,163,350 + -1.0 4,163,351 - -0.6 4,163,351 - +0.2 4,163,386 + AO356_18505 0.14 -0.6 4,163,386 + AO356_18505 0.14 -1.8 4,163,386 + AO356_18505 0.14 -0.9 4,163,387 - AO356_18505 0.14 -1.4 4,163,387 - AO356_18505 0.14 -1.6 4,163,387 - AO356_18505 0.14 -1.6 4,163,453 - AO356_18505 0.22 -0.2 4,163,479 - AO356_18505 0.25 -1.9 4,163,515 + AO356_18505 0.29 +0.8 4,163,515 + AO356_18505 0.29 -1.7 4,163,515 + AO356_18505 0.29 +0.9 4,163,516 - AO356_18505 0.29 +2.7 4,163,524 + AO356_18505 0.30 +0.3 4,163,547 - AO356_18505 0.33 -0.3 4,163,570 - AO356_18505 0.36 -0.0 4,163,570 - AO356_18505 0.36 -1.3 4,163,570 - AO356_18505 0.36 -2.4 4,163,689 + AO356_18505 0.50 -1.1 4,163,689 + AO356_18505 0.50 -0.5 4,163,690 - AO356_18505 0.50 +0.3 4,163,807 + AO356_18505 0.64 +0.2 4,163,807 + AO356_18505 0.64 -0.1 4,163,807 + AO356_18505 0.64 -1.0 4,163,807 + AO356_18505 0.64 +0.7 4,163,807 + AO356_18505 0.64 -0.6 4,163,807 + AO356_18505 0.64 +0.4 4,163,807 + AO356_18505 0.64 -1.8 4,163,808 - AO356_18505 0.65 +0.2 4,163,859 + AO356_18505 0.71 +0.1 4,163,860 - AO356_18505 0.71 -0.9 4,164,388 - AO356_18510 0.29 +0.1 4,164,388 - AO356_18510 0.29 -1.1 4,164,463 + AO356_18510 0.37 -0.2 4,164,463 + AO356_18510 0.37 +0.8 4,164,464 - AO356_18510 0.37 -0.8 4,164,464 - AO356_18510 0.37 -1.3 4,164,488 + AO356_18510 0.39 +0.3 4,165,065 + -1.4 4,165,065 + -0.5 4,165,066 - -0.3 4,165,066 - -1.4 4,165,066 - -0.5 4,165,066 - -0.8 4,165,066 - -1.4 4,165,066 - +0.1 4,165,237 + -0.4 4,165,238 - +1.5 4,165,269 + -0.5 4,165,269 + +0.1 4,165,270 - -1.2 4,165,270 - +0.7 4,165,270 - +1.1
Or see this region's nucleotide sequence