Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_16715

Experiment: Lomefloxacin 0.0005 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_16710 and AO356_16715 are separated by 311 nucleotidesAO356_16715 and AO356_16720 are separated by 186 nucleotides AO356_16710: AO356_16710 - cysteine biosynthesis protein CysZ, at 3,769,100 to 3,769,855 _16710 AO356_16715: AO356_16715 - thioredoxin reductase, at 3,770,167 to 3,771,129 _16715 AO356_16720: AO356_16720 - 4-aminobutyrate aminotransferase, at 3,771,316 to 3,772,566 _16720 Position (kb) 3770 3771 3772Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3769.218 kb on + strand, within AO356_16710at 3769.219 kb on - strand, within AO356_16710at 3769.320 kb on + strand, within AO356_16710at 3769.321 kb on - strand, within AO356_16710at 3769.321 kb on - strand, within AO356_16710at 3769.321 kb on - strand, within AO356_16710at 3769.431 kb on + strand, within AO356_16710at 3769.597 kb on + strand, within AO356_16710at 3769.597 kb on + strand, within AO356_16710at 3769.597 kb on + strand, within AO356_16710at 3769.598 kb on - strand, within AO356_16710at 3769.647 kb on + strand, within AO356_16710at 3769.647 kb on + strand, within AO356_16710at 3769.647 kb on + strand, within AO356_16710at 3769.647 kb on + strand, within AO356_16710at 3769.647 kb on + strand, within AO356_16710at 3769.647 kb on + strand, within AO356_16710at 3769.647 kb on + strand, within AO356_16710at 3769.647 kb on + strand, within AO356_16710at 3769.647 kb on + strand, within AO356_16710at 3769.648 kb on - strand, within AO356_16710at 3769.648 kb on - strand, within AO356_16710at 3769.648 kb on - strand, within AO356_16710at 3769.648 kb on - strand, within AO356_16710at 3769.648 kb on - strand, within AO356_16710at 3769.648 kb on - strand, within AO356_16710at 3769.648 kb on - strand, within AO356_16710at 3769.648 kb on - strand, within AO356_16710at 3769.648 kb on - strand, within AO356_16710at 3769.648 kb on - strand, within AO356_16710at 3769.648 kb on - strand, within AO356_16710at 3769.648 kb on - strand, within AO356_16710at 3769.725 kb on + strand, within AO356_16710at 3769.725 kb on + strand, within AO356_16710at 3769.726 kb on - strand, within AO356_16710at 3769.726 kb on - strand, within AO356_16710at 3769.772 kb on + strand, within AO356_16710at 3769.772 kb on + strand, within AO356_16710at 3769.773 kb on - strand, within AO356_16710at 3769.773 kb on - strand, within AO356_16710at 3769.825 kb on - strandat 3769.855 kb on + strandat 3769.855 kb on + strandat 3769.855 kb on + strandat 3769.855 kb on + strandat 3769.855 kb on + strandat 3769.855 kb on + strandat 3769.856 kb on - strandat 3769.856 kb on - strandat 3769.856 kb on - strandat 3769.931 kb on + strandat 3769.931 kb on + strandat 3769.931 kb on + strandat 3769.932 kb on - strandat 3769.932 kb on - strandat 3769.932 kb on - strandat 3769.932 kb on - strandat 3769.932 kb on - strandat 3769.932 kb on - strandat 3769.932 kb on - strandat 3769.959 kb on + strandat 3769.959 kb on + strandat 3769.960 kb on - strandat 3769.960 kb on - strandat 3769.962 kb on + strandat 3769.963 kb on - strandat 3769.980 kb on + strandat 3769.981 kb on - strandat 3769.991 kb on + strandat 3771.169 kb on - strandat 3771.179 kb on + strandat 3771.180 kb on - strandat 3771.180 kb on - strandat 3771.228 kb on + strandat 3771.228 kb on + strandat 3771.228 kb on + strandat 3771.228 kb on + strandat 3771.229 kb on - strandat 3771.557 kb on + strand, within AO356_16720at 3771.557 kb on + strand, within AO356_16720at 3771.557 kb on + strand, within AO356_16720at 3771.558 kb on - strand, within AO356_16720at 3771.558 kb on - strand, within AO356_16720at 3771.565 kb on + strand, within AO356_16720at 3771.701 kb on + strand, within AO356_16720at 3771.701 kb on + strand, within AO356_16720at 3771.702 kb on - strand, within AO356_16720at 3771.702 kb on - strand, within AO356_16720at 3772.095 kb on - strand, within AO356_16720at 3772.095 kb on - strand, within AO356_16720at 3772.095 kb on - strand, within AO356_16720at 3772.095 kb on - strand, within AO356_16720at 3772.095 kb on - strand, within AO356_16720at 3772.095 kb on - strand, within AO356_16720

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.0005 mM
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3,769,218 + AO356_16710 0.16 -1.8
3,769,219 - AO356_16710 0.16 +0.5
3,769,320 + AO356_16710 0.29 +0.4
3,769,321 - AO356_16710 0.29 +0.8
3,769,321 - AO356_16710 0.29 -0.2
3,769,321 - AO356_16710 0.29 +1.0
3,769,431 + AO356_16710 0.44 -0.2
3,769,597 + AO356_16710 0.66 -0.5
3,769,597 + AO356_16710 0.66 -0.5
3,769,597 + AO356_16710 0.66 -0.4
3,769,598 - AO356_16710 0.66 +0.2
3,769,647 + AO356_16710 0.72 +0.6
3,769,647 + AO356_16710 0.72 -0.5
3,769,647 + AO356_16710 0.72 -1.8
3,769,647 + AO356_16710 0.72 +0.2
3,769,647 + AO356_16710 0.72 +0.1
3,769,647 + AO356_16710 0.72 -0.9
3,769,647 + AO356_16710 0.72 -0.6
3,769,647 + AO356_16710 0.72 -0.0
3,769,647 + AO356_16710 0.72 -0.7
3,769,648 - AO356_16710 0.72 -0.2
3,769,648 - AO356_16710 0.72 +0.6
3,769,648 - AO356_16710 0.72 +1.0
3,769,648 - AO356_16710 0.72 -0.2
3,769,648 - AO356_16710 0.72 -2.0
3,769,648 - AO356_16710 0.72 +0.0
3,769,648 - AO356_16710 0.72 +0.3
3,769,648 - AO356_16710 0.72 -0.0
3,769,648 - AO356_16710 0.72 -0.0
3,769,648 - AO356_16710 0.72 +0.7
3,769,648 - AO356_16710 0.72 +0.5
3,769,648 - AO356_16710 0.72 +1.6
3,769,725 + AO356_16710 0.83 -0.1
3,769,725 + AO356_16710 0.83 +0.5
3,769,726 - AO356_16710 0.83 -1.5
3,769,726 - AO356_16710 0.83 -1.6
3,769,772 + AO356_16710 0.89 -1.0
3,769,772 + AO356_16710 0.89 +0.9
3,769,773 - AO356_16710 0.89 -1.7
3,769,773 - AO356_16710 0.89 -0.9
3,769,825 - +0.4
3,769,855 + +0.1
3,769,855 + -0.0
3,769,855 + -0.3
3,769,855 + -0.0
3,769,855 + -0.6
3,769,855 + +1.1
3,769,856 - +0.1
3,769,856 - +0.9
3,769,856 - -0.2
3,769,931 + -1.3
3,769,931 + -0.5
3,769,931 + +0.7
3,769,932 - -0.2
3,769,932 - +0.3
3,769,932 - -1.2
3,769,932 - -1.0
3,769,932 - -0.6
3,769,932 - +0.4
3,769,932 - -2.6
3,769,959 + -0.4
3,769,959 + -2.0
3,769,960 - -2.2
3,769,960 - +0.5
3,769,962 + -0.8
3,769,963 - -0.1
3,769,980 + -3.2
3,769,981 - +0.9
3,769,991 + +1.1
3,771,169 - +0.3
3,771,179 + -1.1
3,771,180 - -2.0
3,771,180 - -1.2
3,771,228 + -0.8
3,771,228 + +0.2
3,771,228 + -0.4
3,771,228 + +0.7
3,771,229 - -0.3
3,771,557 + AO356_16720 0.19 +1.6
3,771,557 + AO356_16720 0.19 +2.4
3,771,557 + AO356_16720 0.19 +0.8
3,771,558 - AO356_16720 0.19 +0.9
3,771,558 - AO356_16720 0.19 +0.4
3,771,565 + AO356_16720 0.20 +0.1
3,771,701 + AO356_16720 0.31 -1.3
3,771,701 + AO356_16720 0.31 -2.0
3,771,702 - AO356_16720 0.31 +1.6
3,771,702 - AO356_16720 0.31 -1.3
3,772,095 - AO356_16720 0.62 -0.0
3,772,095 - AO356_16720 0.62 -0.0
3,772,095 - AO356_16720 0.62 -0.2
3,772,095 - AO356_16720 0.62 +0.5
3,772,095 - AO356_16720 0.62 -1.3
3,772,095 - AO356_16720 0.62 +0.1

Or see this region's nucleotide sequence