Experiment: Lomefloxacin 0.0005 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_14985 and AO356_14990 are separated by 145 nucleotides AO356_14990 and AO356_14995 are separated by 115 nucleotides
AO356_14985: AO356_14985 - TonB-dependent receptor, at 3,386,648 to 3,388,528
_14985
AO356_14990: AO356_14990 - 1-deoxy-D-xylulose-5-phosphate synthase, at 3,388,674 to 3,390,572
_14990
AO356_14995: AO356_14995 - geranyl transferase, at 3,390,688 to 3,391,575
_14995
AO356_15000: AO356_15000 - exodeoxyribonuclease VII small subunit, at 3,391,572 to 3,391,814
_15000
Position (kb)
3388
3389
3390
3391 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3387.681 kb on + strand, within AO356_14985 at 3387.681 kb on + strand, within AO356_14985 at 3387.681 kb on + strand, within AO356_14985 at 3387.681 kb on + strand, within AO356_14985 at 3387.681 kb on + strand, within AO356_14985 at 3387.681 kb on + strand, within AO356_14985 at 3387.681 kb on + strand, within AO356_14985 at 3387.681 kb on + strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.682 kb on - strand, within AO356_14985 at 3387.714 kb on + strand, within AO356_14985 at 3387.714 kb on + strand, within AO356_14985 at 3387.775 kb on - strand, within AO356_14985 at 3387.775 kb on - strand, within AO356_14985 at 3387.775 kb on - strand, within AO356_14985 at 3387.898 kb on - strand, within AO356_14985 at 3388.104 kb on + strand, within AO356_14985 at 3388.104 kb on + strand, within AO356_14985 at 3388.105 kb on - strand, within AO356_14985 at 3388.105 kb on - strand, within AO356_14985 at 3388.105 kb on - strand, within AO356_14985 at 3388.254 kb on + strand, within AO356_14985 at 3388.254 kb on + strand, within AO356_14985 at 3388.254 kb on + strand, within AO356_14985 at 3388.255 kb on - strand, within AO356_14985 at 3388.675 kb on + strand at 3388.675 kb on + strand at 3388.676 kb on - strand at 3388.676 kb on - strand at 3388.676 kb on - strand at 3388.676 kb on - strand at 3388.676 kb on - strand at 3388.676 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.588 kb on - strand at 3390.592 kb on - strand at 3390.592 kb on - strand at 3390.592 kb on - strand at 3390.592 kb on - strand at 3390.592 kb on - strand at 3390.594 kb on - strand at 3390.594 kb on - strand at 3390.594 kb on - strand at 3390.594 kb on - strand at 3390.612 kb on - strand at 3390.612 kb on - strand at 3390.617 kb on - strand at 3390.617 kb on - strand at 3390.617 kb on - strand at 3390.617 kb on - strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.667 kb on + strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.668 kb on - strand at 3390.686 kb on + strand at 3390.687 kb on - strand at 3390.687 kb on - strand at 3390.687 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.0005 mM remove 3,387,681 + AO356_14985 0.55 -0.9 3,387,681 + AO356_14985 0.55 +0.0 3,387,681 + AO356_14985 0.55 -2.0 3,387,681 + AO356_14985 0.55 -0.4 3,387,681 + AO356_14985 0.55 +0.3 3,387,681 + AO356_14985 0.55 -0.3 3,387,681 + AO356_14985 0.55 -0.6 3,387,681 + AO356_14985 0.55 -0.8 3,387,682 - AO356_14985 0.55 -0.3 3,387,682 - AO356_14985 0.55 -0.4 3,387,682 - AO356_14985 0.55 -0.3 3,387,682 - AO356_14985 0.55 -2.0 3,387,682 - AO356_14985 0.55 -2.0 3,387,682 - AO356_14985 0.55 -1.3 3,387,682 - AO356_14985 0.55 +0.6 3,387,682 - AO356_14985 0.55 +0.4 3,387,682 - AO356_14985 0.55 -1.2 3,387,682 - AO356_14985 0.55 -3.6 3,387,682 - AO356_14985 0.55 -0.6 3,387,682 - AO356_14985 0.55 -2.0 3,387,714 + AO356_14985 0.57 -0.6 3,387,714 + AO356_14985 0.57 +1.4 3,387,775 - AO356_14985 0.60 +0.0 3,387,775 - AO356_14985 0.60 -1.4 3,387,775 - AO356_14985 0.60 +0.3 3,387,898 - AO356_14985 0.66 +1.9 3,388,104 + AO356_14985 0.77 -0.8 3,388,104 + AO356_14985 0.77 -1.3 3,388,105 - AO356_14985 0.77 +0.9 3,388,105 - AO356_14985 0.77 -0.9 3,388,105 - AO356_14985 0.77 -0.1 3,388,254 + AO356_14985 0.85 -0.1 3,388,254 + AO356_14985 0.85 -1.0 3,388,254 + AO356_14985 0.85 +0.2 3,388,255 - AO356_14985 0.85 -1.6 3,388,675 + -1.8 3,388,675 + +0.1 3,388,676 - -0.1 3,388,676 - -1.5 3,388,676 - -1.4 3,388,676 - +0.3 3,388,676 - -1.5 3,388,676 - -0.1 3,390,588 - +2.1 3,390,588 - +0.4 3,390,588 - +0.0 3,390,588 - -1.5 3,390,588 - -2.4 3,390,588 - -0.3 3,390,588 - -1.1 3,390,588 - -0.5 3,390,592 - -0.2 3,390,592 - +0.9 3,390,592 - +1.0 3,390,592 - -0.2 3,390,592 - +0.2 3,390,594 - +0.0 3,390,594 - +2.0 3,390,594 - -0.9 3,390,594 - +1.2 3,390,612 - -1.0 3,390,612 - +0.4 3,390,617 - -0.2 3,390,617 - -0.3 3,390,617 - +0.1 3,390,617 - -1.8 3,390,667 + +0.2 3,390,667 + -1.0 3,390,667 + +1.1 3,390,667 + +1.7 3,390,667 + +1.0 3,390,667 + +0.6 3,390,667 + +2.3 3,390,668 - -0.6 3,390,668 - -0.1 3,390,668 - +0.4 3,390,668 - +0.3 3,390,668 - +0.2 3,390,668 - -1.0 3,390,668 - -0.6 3,390,668 - -1.1 3,390,686 + -0.4 3,390,687 - -0.6 3,390,687 - +1.9 3,390,687 - -1.1
Or see this region's nucleotide sequence