Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07345

Experiment: Lomefloxacin 0.0005 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_07340 and AO356_07345 are separated by 20 nucleotidesAO356_07345 and AO356_07350 are separated by 101 nucleotides AO356_07340: AO356_07340 - transcriptional regulator, at 1,626,498 to 1,627,493 _07340 AO356_07345: AO356_07345 - hydrolase TatD, at 1,627,514 to 1,628,290 _07345 AO356_07350: AO356_07350 - chemotaxis protein, at 1,628,392 to 1,630,422 _07350 Position (kb) 1627 1628 1629Strain fitness (log2 ratio) -3 -2 -1 0 1at 1626.552 kb on + strandat 1626.552 kb on + strandat 1626.552 kb on + strandat 1626.552 kb on + strandat 1626.552 kb on + strandat 1626.552 kb on + strandat 1626.552 kb on + strandat 1626.552 kb on + strandat 1626.552 kb on + strandat 1626.552 kb on + strandat 1626.552 kb on + strandat 1626.553 kb on - strandat 1626.553 kb on - strandat 1626.553 kb on - strandat 1626.553 kb on - strandat 1626.723 kb on + strand, within AO356_07340at 1626.723 kb on + strand, within AO356_07340at 1626.723 kb on + strand, within AO356_07340at 1626.724 kb on - strand, within AO356_07340at 1626.724 kb on - strand, within AO356_07340at 1626.724 kb on - strand, within AO356_07340at 1626.897 kb on + strand, within AO356_07340at 1626.897 kb on + strand, within AO356_07340at 1626.898 kb on - strand, within AO356_07340at 1626.898 kb on - strand, within AO356_07340at 1626.898 kb on - strand, within AO356_07340at 1626.898 kb on - strand, within AO356_07340at 1626.923 kb on - strand, within AO356_07340at 1627.239 kb on + strand, within AO356_07340at 1627.239 kb on + strand, within AO356_07340at 1627.239 kb on + strand, within AO356_07340at 1627.239 kb on + strand, within AO356_07340at 1627.239 kb on + strand, within AO356_07340at 1627.239 kb on + strand, within AO356_07340at 1627.240 kb on - strand, within AO356_07340at 1627.240 kb on - strand, within AO356_07340at 1627.240 kb on - strand, within AO356_07340at 1627.240 kb on - strand, within AO356_07340at 1627.240 kb on - strand, within AO356_07340at 1627.240 kb on - strand, within AO356_07340at 1627.240 kb on - strand, within AO356_07340at 1627.240 kb on - strand, within AO356_07340at 1627.240 kb on - strand, within AO356_07340at 1627.240 kb on - strand, within AO356_07340at 1627.240 kb on - strand, within AO356_07340at 1627.301 kb on - strand, within AO356_07340at 1627.434 kb on + strandat 1627.434 kb on + strandat 1627.434 kb on + strandat 1627.817 kb on + strand, within AO356_07345at 1627.817 kb on + strand, within AO356_07345at 1627.817 kb on + strand, within AO356_07345at 1627.818 kb on - strand, within AO356_07345at 1627.818 kb on - strand, within AO356_07345at 1627.818 kb on - strand, within AO356_07345at 1627.818 kb on - strand, within AO356_07345at 1627.820 kb on + strand, within AO356_07345at 1627.820 kb on + strand, within AO356_07345at 1627.820 kb on + strand, within AO356_07345at 1627.820 kb on + strand, within AO356_07345at 1627.820 kb on + strand, within AO356_07345at 1627.820 kb on + strand, within AO356_07345at 1627.820 kb on + strand, within AO356_07345at 1627.820 kb on + strand, within AO356_07345at 1627.821 kb on - strand, within AO356_07345at 1627.821 kb on - strand, within AO356_07345at 1627.821 kb on - strand, within AO356_07345at 1627.821 kb on - strand, within AO356_07345at 1627.821 kb on - strand, within AO356_07345at 1628.288 kb on + strandat 1628.328 kb on + strandat 1628.328 kb on + strandat 1628.328 kb on + strandat 1628.328 kb on + strandat 1628.393 kb on + strandat 1628.394 kb on - strandat 1628.394 kb on - strandat 1628.394 kb on - strandat 1628.613 kb on + strand, within AO356_07350at 1628.614 kb on - strand, within AO356_07350at 1629.255 kb on + strand, within AO356_07350

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.0005 mM
remove
1,626,552 + -0.0
1,626,552 + -2.0
1,626,552 + -1.4
1,626,552 + +0.8
1,626,552 + -1.1
1,626,552 + +0.7
1,626,552 + +0.0
1,626,552 + +1.4
1,626,552 + -0.4
1,626,552 + -0.5
1,626,552 + +0.5
1,626,553 - -1.3
1,626,553 - +0.5
1,626,553 - -0.6
1,626,553 - +1.3
1,626,723 + AO356_07340 0.23 -0.9
1,626,723 + AO356_07340 0.23 +1.0
1,626,723 + AO356_07340 0.23 +1.5
1,626,724 - AO356_07340 0.23 -0.3
1,626,724 - AO356_07340 0.23 -1.1
1,626,724 - AO356_07340 0.23 +0.6
1,626,897 + AO356_07340 0.40 +0.1
1,626,897 + AO356_07340 0.40 -1.0
1,626,898 - AO356_07340 0.40 -0.9
1,626,898 - AO356_07340 0.40 -2.8
1,626,898 - AO356_07340 0.40 -2.6
1,626,898 - AO356_07340 0.40 +0.2
1,626,923 - AO356_07340 0.43 -0.5
1,627,239 + AO356_07340 0.74 -0.7
1,627,239 + AO356_07340 0.74 +0.8
1,627,239 + AO356_07340 0.74 -0.4
1,627,239 + AO356_07340 0.74 -1.0
1,627,239 + AO356_07340 0.74 -2.7
1,627,239 + AO356_07340 0.74 -0.8
1,627,240 - AO356_07340 0.74 +0.5
1,627,240 - AO356_07340 0.74 -0.2
1,627,240 - AO356_07340 0.74 -0.5
1,627,240 - AO356_07340 0.74 -0.2
1,627,240 - AO356_07340 0.74 -1.0
1,627,240 - AO356_07340 0.74 +0.2
1,627,240 - AO356_07340 0.74 -1.2
1,627,240 - AO356_07340 0.74 -0.1
1,627,240 - AO356_07340 0.74 -0.5
1,627,240 - AO356_07340 0.74 -0.3
1,627,240 - AO356_07340 0.74 -0.4
1,627,301 - AO356_07340 0.81 +0.4
1,627,434 + +0.1
1,627,434 + +0.3
1,627,434 + -1.5
1,627,817 + AO356_07345 0.39 -0.0
1,627,817 + AO356_07345 0.39 +0.3
1,627,817 + AO356_07345 0.39 -2.1
1,627,818 - AO356_07345 0.39 -1.0
1,627,818 - AO356_07345 0.39 +0.3
1,627,818 - AO356_07345 0.39 +0.5
1,627,818 - AO356_07345 0.39 -3.4
1,627,820 + AO356_07345 0.39 -2.0
1,627,820 + AO356_07345 0.39 -2.5
1,627,820 + AO356_07345 0.39 +0.0
1,627,820 + AO356_07345 0.39 -1.3
1,627,820 + AO356_07345 0.39 -1.6
1,627,820 + AO356_07345 0.39 -0.2
1,627,820 + AO356_07345 0.39 +0.2
1,627,820 + AO356_07345 0.39 -0.1
1,627,821 - AO356_07345 0.40 -1.3
1,627,821 - AO356_07345 0.40 +0.7
1,627,821 - AO356_07345 0.40 +0.1
1,627,821 - AO356_07345 0.40 -1.1
1,627,821 - AO356_07345 0.40 -2.5
1,628,288 + -0.7
1,628,328 + -0.7
1,628,328 + -1.0
1,628,328 + +0.3
1,628,328 + +0.4
1,628,393 + -0.1
1,628,394 - +0.6
1,628,394 - -0.2
1,628,394 - -1.1
1,628,613 + AO356_07350 0.11 -0.4
1,628,614 - AO356_07350 0.11 -0.4
1,629,255 + AO356_07350 0.42 -3.7

Or see this region's nucleotide sequence