Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06000

Experiment: Lomefloxacin 0.0005 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_05990 and AO356_05995 are separated by 3 nucleotidesAO356_05995 and AO356_06000 are separated by 45 nucleotidesAO356_06000 and AO356_06005 are separated by 74 nucleotides AO356_05990: AO356_05990 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, at 1,327,623 to 1,328,678 _05990 AO356_05995: AO356_05995 - hypothetical protein, at 1,328,682 to 1,329,185 _05995 AO356_06000: AO356_06000 - outer membrane protein assembly factor BamA, at 1,329,231 to 1,331,606 _06000 AO356_06005: AO356_06005 - zinc metallopeptidase RseP, at 1,331,681 to 1,333,033 _06005 Position (kb) 1329 1330 1331 1332Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1328.684 kb on - strandat 1328.729 kb on - strandat 1329.059 kb on - strand, within AO356_05995at 1329.059 kb on - strand, within AO356_05995at 1329.059 kb on - strand, within AO356_05995at 1329.098 kb on - strand, within AO356_05995at 1329.180 kb on - strandat 1329.180 kb on - strandat 1329.180 kb on - strandat 1329.180 kb on - strandat 1329.233 kb on - strandat 1329.233 kb on - strandat 1331.751 kb on - strandat 1331.809 kb on - strandat 1331.870 kb on - strand, within AO356_06005at 1331.881 kb on - strand, within AO356_06005at 1331.881 kb on - strand, within AO356_06005at 1332.237 kb on - strand, within AO356_06005at 1332.237 kb on - strand, within AO356_06005

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.0005 mM
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1,328,684 - -1.6
1,328,729 - -0.8
1,329,059 - AO356_05995 0.75 -3.0
1,329,059 - AO356_05995 0.75 -2.3
1,329,059 - AO356_05995 0.75 -2.3
1,329,098 - AO356_05995 0.83 -2.3
1,329,180 - -2.8
1,329,180 - -3.3
1,329,180 - -3.3
1,329,180 - -1.7
1,329,233 - +1.2
1,329,233 - -2.3
1,331,751 - -1.3
1,331,809 - -3.8
1,331,870 - AO356_06005 0.14 -0.6
1,331,881 - AO356_06005 0.15 -2.5
1,331,881 - AO356_06005 0.15 -2.1
1,332,237 - AO356_06005 0.41 -1.0
1,332,237 - AO356_06005 0.41 -0.7

Or see this region's nucleotide sequence