Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3752 and Shew_3753 are separated by 183 nucleotides Shew_3753 and Shew_3754 are separated by 93 nucleotides Shew_3754 and Shew_3755 are separated by 65 nucleotides Shew_3755 and Shew_3756 are separated by 150 nucleotides
Shew_3752: Shew_3752 - MscS mechanosensitive ion channel (RefSeq), at 4,468,492 to 4,469,742
_3752
Shew_3753: Shew_3753 - hypothetical protein (RefSeq), at 4,469,926 to 4,470,450
_3753
Shew_3754: Shew_3754 - hypothetical protein (RefSeq), at 4,470,544 to 4,471,221
_3754
Shew_3755: Shew_3755 - thioesterase superfamily protein (RefSeq), at 4,471,287 to 4,471,766
_3755
Shew_3756: Shew_3756 - histidine ammonia-lyase (RefSeq), at 4,471,917 to 4,473,449
_3756
Position (kb) 4470
4471
4472 Strain fitness (log2 ratio) -1
0
1 at 4469.596 kb on - strand, within Shew_3752 at 4469.853 kb on + strand at 4470.073 kb on - strand, within Shew_3753 at 4470.265 kb on - strand, within Shew_3753 at 4470.714 kb on + strand, within Shew_3754 at 4470.736 kb on - strand, within Shew_3754 at 4470.818 kb on - strand, within Shew_3754 at 4470.874 kb on + strand, within Shew_3754 at 4470.987 kb on - strand, within Shew_3754 at 4471.050 kb on + strand, within Shew_3754 at 4471.058 kb on - strand, within Shew_3754 at 4471.159 kb on + strand at 4471.167 kb on - strand at 4471.378 kb on - strand, within Shew_3755 at 4471.473 kb on - strand, within Shew_3755 at 4471.830 kb on + strand at 4471.921 kb on + strand at 4471.921 kb on + strand at 4472.050 kb on + strand at 4472.058 kb on - strand at 4472.058 kb on - strand at 4472.058 kb on - strand at 4472.087 kb on - strand, within Shew_3756
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,469,596 - Shew_3752 0.88 +0.1 4,469,853 + -0.0 4,470,073 - Shew_3753 0.28 -0.2 4,470,265 - Shew_3753 0.65 +0.0 4,470,714 + Shew_3754 0.25 +0.2 4,470,736 - Shew_3754 0.28 +0.4 4,470,818 - Shew_3754 0.40 +0.2 4,470,874 + Shew_3754 0.49 +1.4 4,470,987 - Shew_3754 0.65 +0.1 4,471,050 + Shew_3754 0.75 +0.1 4,471,058 - Shew_3754 0.76 +0.0 4,471,159 + +0.2 4,471,167 - -0.2 4,471,378 - Shew_3755 0.19 +0.4 4,471,473 - Shew_3755 0.39 -0.1 4,471,830 + -0.1 4,471,921 + -0.6 4,471,921 + -0.5 4,472,050 + -0.8 4,472,058 - -1.0 4,472,058 - -0.7 4,472,058 - -0.0 4,472,087 - Shew_3756 0.11 -0.9
Or see this region's nucleotide sequence