Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2397 and Shew_2398 are separated by 63 nucleotides Shew_2398 and folX are separated by 75 nucleotides folX and Shew_2400 are separated by 96 nucleotides
Shew_2397: Shew_2397 - hypothetical protein (RefSeq), at 2,811,517 to 2,812,434
_2397
Shew_2398: Shew_2398 - hypothetical protein (RefSeq), at 2,812,498 to 2,813,667
_2398
Shew_2399: folX - D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase (RefSeq), at 2,813,743 to 2,814,108
folX
Shew_2400: Shew_2400 - hypothetical protein (RefSeq), at 2,814,205 to 2,815,134
_2400
Position (kb) 2812
2813
2814 Strain fitness (log2 ratio) -1
0
1 at 2811.625 kb on + strand, within Shew_2397 at 2812.165 kb on + strand, within Shew_2397 at 2812.218 kb on - strand, within Shew_2397 at 2812.568 kb on + strand at 2812.594 kb on - strand at 2812.622 kb on + strand, within Shew_2398 at 2813.175 kb on - strand, within Shew_2398 at 2813.258 kb on + strand, within Shew_2398 at 2813.266 kb on - strand, within Shew_2398
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,811,625 + Shew_2397 0.12 +0.0 2,812,165 + Shew_2397 0.71 -0.4 2,812,218 - Shew_2397 0.76 +0.1 2,812,568 + -0.0 2,812,594 - +1.1 2,812,622 + Shew_2398 0.11 -0.1 2,813,175 - Shew_2398 0.58 -0.6 2,813,258 + Shew_2398 0.65 -0.5 2,813,266 - Shew_2398 0.66 -0.3
Or see this region's nucleotide sequence