Strain Fitness in Shewanella loihica PV-4 around Shew_1942

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1941 and Shew_1942 are separated by 165 nucleotidesShew_1942 and Shew_1943 are separated by 123 nucleotidesShew_1943 and Shew_1944 are separated by 280 nucleotides Shew_1941: Shew_1941 - signal peptide peptidase SppA, 67K type (RefSeq), at 2,240,803 to 2,242,644 _1941 Shew_1942: Shew_1942 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 2,242,810 to 2,244,825 _1942 Shew_1943: Shew_1943 - hypothetical protein (RefSeq), at 2,244,949 to 2,245,449 _1943 Shew_1944: Shew_1944 - ferredoxin (RefSeq), at 2,245,730 to 2,246,110 _1944 Position (kb) 2242 2243 2244 2245Strain fitness (log2 ratio) -1 0 1at 2241.902 kb on - strand, within Shew_1941at 2242.256 kb on + strand, within Shew_1941at 2242.476 kb on - strandat 2243.024 kb on - strand, within Shew_1942at 2244.310 kb on + strand, within Shew_1942at 2244.535 kb on + strand, within Shew_1942at 2245.430 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,241,902 - Shew_1941 0.60 +0.1
2,242,256 + Shew_1941 0.79 +0.0
2,242,476 - +0.8
2,243,024 - Shew_1942 0.11 +1.0
2,244,310 + Shew_1942 0.74 +0.3
2,244,535 + Shew_1942 0.86 +0.1
2,245,430 - -0.4

Or see this region's nucleotide sequence