Strain Fitness in Sinorhizobium meliloti 1021 around SMc03993

Experiment: L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03992 and SMc03993 overlap by 4 nucleotidesSMc03993 and SMc03994 are separated by 314 nucleotides SMc03992: SMc03992 - hypothetical protein, at 2,989,855 to 2,990,889 SMc03992 SMc03993: SMc03993 - hypothetical protein, at 2,990,886 to 2,991,992 SMc03993 SMc03994: SMc03994 - inositol monophosphatase, at 2,992,307 to 2,993,107 SMc03994 Position (kb) 2990 2991 2992Strain fitness (log2 ratio) -1 0 1at 2990.051 kb on - strand, within SMc03992at 2990.844 kb on - strandat 2990.844 kb on - strandat 2991.071 kb on + strand, within SMc03993at 2991.278 kb on + strand, within SMc03993at 2991.281 kb on - strand, within SMc03993at 2991.993 kb on - strandat 2992.136 kb on + strandat 2992.152 kb on - strandat 2992.252 kb on + strandat 2992.297 kb on + strandat 2992.297 kb on + strandat 2992.298 kb on - strandat 2992.298 kb on - strandat 2992.298 kb on - strandat 2992.298 kb on - strandat 2992.300 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine
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2,990,051 - SMc03992 0.19 +0.8
2,990,844 - -0.4
2,990,844 - -0.6
2,991,071 + SMc03993 0.17 -0.7
2,991,278 + SMc03993 0.35 -1.6
2,991,281 - SMc03993 0.36 -1.1
2,991,993 - +0.8
2,992,136 + +0.7
2,992,152 - -1.5
2,992,252 + +0.0
2,992,297 + -0.2
2,992,297 + +0.8
2,992,298 - -0.3
2,992,298 - -0.2
2,992,298 - -0.2
2,992,298 - -0.5
2,992,300 - -1.2

Or see this region's nucleotide sequence