Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03825 and SMc03826 are separated by 62 nucleotides SMc03826 and SMc03827 are separated by 212 nucleotides SMc03827 and SMc03828 are separated by 133 nucleotides
SMc03825: SMc03825 - transporter, at 3,491,154 to 3,492,392
SMc03825
SMc03826: SMc03826 - argininosuccinate synthase, at 3,492,455 to 3,493,672
SMc03826
SMc03827: SMc03827 - amino acid efflux transmembrane protein, at 3,493,885 to 3,494,526
SMc03827
SMc03828: SMc03828 - ABC transporter ATP-binding protein, at 3,494,660 to 3,495,454
SMc03828
Position (kb)
3492
3493
3494 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3491.764 kb on - strand, within SMc03825 at 3491.774 kb on + strand, within SMc03825 at 3491.774 kb on + strand, within SMc03825 at 3491.774 kb on + strand, within SMc03825 at 3491.774 kb on + strand, within SMc03825 at 3491.774 kb on + strand, within SMc03825 at 3491.775 kb on - strand, within SMc03825 at 3491.836 kb on - strand, within SMc03825 at 3491.836 kb on - strand, within SMc03825 at 3492.029 kb on - strand, within SMc03825 at 3492.096 kb on + strand, within SMc03825 at 3492.097 kb on - strand, within SMc03825 at 3492.097 kb on - strand, within SMc03825 at 3492.097 kb on - strand, within SMc03825 at 3492.097 kb on - strand, within SMc03825 at 3492.126 kb on + strand, within SMc03825 at 3492.126 kb on + strand, within SMc03825 at 3492.127 kb on - strand, within SMc03825 at 3492.127 kb on - strand, within SMc03825 at 3492.307 kb on - strand at 3492.307 kb on - strand at 3492.442 kb on + strand at 3492.443 kb on - strand at 3492.456 kb on + strand at 3492.457 kb on - strand at 3492.531 kb on + strand at 3493.053 kb on + strand, within SMc03826 at 3493.053 kb on + strand, within SMc03826 at 3493.482 kb on + strand, within SMc03826 at 3493.482 kb on + strand, within SMc03826 at 3493.483 kb on - strand, within SMc03826 at 3493.746 kb on - strand at 3494.055 kb on + strand, within SMc03827 at 3494.056 kb on - strand, within SMc03827 at 3494.056 kb on - strand, within SMc03827 at 3494.140 kb on + strand, within SMc03827 at 3494.141 kb on - strand, within SMc03827 at 3494.147 kb on + strand, within SMc03827 at 3494.217 kb on + strand, within SMc03827 at 3494.373 kb on - strand, within SMc03827 at 3494.589 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 3,491,764 - SMc03825 0.49 +0.1 3,491,774 + SMc03825 0.50 +0.4 3,491,774 + SMc03825 0.50 -0.0 3,491,774 + SMc03825 0.50 -0.4 3,491,774 + SMc03825 0.50 +1.0 3,491,774 + SMc03825 0.50 +0.6 3,491,775 - SMc03825 0.50 -0.0 3,491,836 - SMc03825 0.55 +0.2 3,491,836 - SMc03825 0.55 +0.4 3,492,029 - SMc03825 0.71 +0.2 3,492,096 + SMc03825 0.76 -1.1 3,492,097 - SMc03825 0.76 -0.1 3,492,097 - SMc03825 0.76 +0.0 3,492,097 - SMc03825 0.76 +0.6 3,492,097 - SMc03825 0.76 -0.8 3,492,126 + SMc03825 0.78 +0.7 3,492,126 + SMc03825 0.78 -0.0 3,492,127 - SMc03825 0.79 +0.6 3,492,127 - SMc03825 0.79 -0.0 3,492,307 - +0.9 3,492,307 - -0.8 3,492,442 + +0.8 3,492,443 - +2.1 3,492,456 + -1.0 3,492,457 - -0.1 3,492,531 + -1.2 3,493,053 + SMc03826 0.49 -0.8 3,493,053 + SMc03826 0.49 -3.5 3,493,482 + SMc03826 0.84 -4.6 3,493,482 + SMc03826 0.84 -2.5 3,493,483 - SMc03826 0.84 -2.2 3,493,746 - -1.2 3,494,055 + SMc03827 0.26 -1.8 3,494,056 - SMc03827 0.27 -0.2 3,494,056 - SMc03827 0.27 +0.5 3,494,140 + SMc03827 0.40 +0.8 3,494,141 - SMc03827 0.40 -2.2 3,494,147 + SMc03827 0.41 +0.3 3,494,217 + SMc03827 0.52 +0.3 3,494,373 - SMc03827 0.76 -0.2 3,494,589 + -0.5
Or see this region's nucleotide sequence