Strain Fitness in Sinorhizobium meliloti 1021 around SMc03100

Experiment: L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03101 and SMc03100 are separated by 422 nucleotidesSMc03100 and SMc03099 are separated by 264 nucleotides SMc03101: SMc03101 - carbon monoxide dehydrogenase small subunit protein, at 3,242,113 to 3,242,601 SMc03101 SMc03100: SMc03100 - hypothetical protein, at 3,243,024 to 3,243,275 SMc03100 SMc03099: SMc03099 - adenylate cyclase, at 3,243,540 to 3,245,312 SMc03099 Position (kb) 3243 3244Strain fitness (log2 ratio) -3 -2 -1 0 1at 3242.321 kb on + strand, within SMc03101at 3242.556 kb on + strandat 3242.691 kb on - strandat 3242.814 kb on - strandat 3242.864 kb on + strandat 3242.864 kb on + strandat 3242.865 kb on - strandat 3242.873 kb on + strandat 3242.973 kb on - strandat 3243.231 kb on + strand, within SMc03100at 3243.234 kb on + strand, within SMc03100at 3243.234 kb on + strand, within SMc03100at 3243.284 kb on - strandat 3243.487 kb on + strandat 3243.487 kb on + strandat 3243.492 kb on + strandat 3243.493 kb on - strandat 3243.493 kb on - strandat 3243.637 kb on + strandat 3243.637 kb on + strandat 3243.637 kb on + strandat 3243.638 kb on - strandat 3243.638 kb on - strandat 3243.638 kb on - strandat 3243.701 kb on + strandat 3243.815 kb on - strand, within SMc03099at 3244.006 kb on + strand, within SMc03099at 3244.007 kb on - strand, within SMc03099at 3244.035 kb on + strand, within SMc03099at 3244.035 kb on + strand, within SMc03099at 3244.204 kb on + strand, within SMc03099

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine
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3,242,321 + SMc03101 0.43 -0.8
3,242,556 + -0.5
3,242,691 - +0.2
3,242,814 - -1.2
3,242,864 + +1.2
3,242,864 + -0.9
3,242,865 - -0.3
3,242,873 + -1.2
3,242,973 - -0.2
3,243,231 + SMc03100 0.82 -0.8
3,243,234 + SMc03100 0.83 -3.5
3,243,234 + SMc03100 0.83 -2.0
3,243,284 - +0.7
3,243,487 + +1.3
3,243,487 + +0.3
3,243,492 + -0.1
3,243,493 - +0.1
3,243,493 - -1.1
3,243,637 + -0.0
3,243,637 + -0.1
3,243,637 + -0.8
3,243,638 - +0.0
3,243,638 - -0.3
3,243,638 - -0.4
3,243,701 + +0.5
3,243,815 - SMc03099 0.16 -0.0
3,244,006 + SMc03099 0.26 -1.7
3,244,007 - SMc03099 0.26 -0.7
3,244,035 + SMc03099 0.28 +0.8
3,244,035 + SMc03099 0.28 -0.4
3,244,204 + SMc03099 0.37 +0.0

Or see this region's nucleotide sequence