Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02325 and SMc03000 overlap by 4 nucleotides SMc03000 and SMc03001 overlap by 1 nucleotides
SMc02325: SMc02325 - ABC transporter ATP-binding protein, at 696,263 to 697,774
SMc02325
SMc03000: SMc03000 - ABC transporter permease, at 697,771 to 698,751
SMc03000
SMc03001: SMc03001 - ABC transporter permease, at 698,751 to 699,755
SMc03001
Position (kb) 697
698
699 Strain fitness (log2 ratio) -1
0
1 at 696.804 kb on - strand, within SMc02325 at 696.804 kb on - strand, within SMc02325 at 696.894 kb on - strand, within SMc02325 at 696.896 kb on - strand, within SMc02325 at 697.115 kb on + strand, within SMc02325 at 697.115 kb on + strand, within SMc02325 at 697.116 kb on - strand, within SMc02325 at 697.116 kb on - strand, within SMc02325 at 697.256 kb on + strand, within SMc02325 at 697.256 kb on + strand, within SMc02325 at 697.256 kb on + strand, within SMc02325 at 697.257 kb on - strand, within SMc02325 at 697.257 kb on - strand, within SMc02325 at 697.257 kb on - strand, within SMc02325 at 697.257 kb on - strand, within SMc02325 at 697.692 kb on - strand at 697.893 kb on + strand, within SMc03000 at 697.893 kb on + strand, within SMc03000 at 698.118 kb on + strand, within SMc03000 at 698.118 kb on + strand, within SMc03000 at 698.118 kb on + strand, within SMc03000 at 698.158 kb on + strand, within SMc03000 at 698.158 kb on + strand, within SMc03000 at 698.158 kb on + strand, within SMc03000 at 698.413 kb on + strand, within SMc03000 at 698.414 kb on - strand, within SMc03000 at 698.449 kb on + strand, within SMc03000 at 698.449 kb on + strand, within SMc03000 at 698.631 kb on + strand, within SMc03000 at 698.631 kb on + strand, within SMc03000 at 698.632 kb on - strand, within SMc03000 at 698.632 kb on - strand, within SMc03000 at 698.889 kb on + strand, within SMc03001 at 699.040 kb on - strand, within SMc03001 at 699.264 kb on + strand, within SMc03001 at 699.264 kb on + strand, within SMc03001 at 699.264 kb on + strand, within SMc03001 at 699.264 kb on + strand, within SMc03001 at 699.265 kb on - strand, within SMc03001 at 699.321 kb on + strand, within SMc03001 at 699.363 kb on + strand, within SMc03001 at 699.399 kb on + strand, within SMc03001
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 696,804 - SMc02325 0.36 +0.3 696,804 - SMc02325 0.36 -0.1 696,894 - SMc02325 0.42 +0.1 696,896 - SMc02325 0.42 -0.5 697,115 + SMc02325 0.56 +0.2 697,115 + SMc02325 0.56 +0.8 697,116 - SMc02325 0.56 -0.6 697,116 - SMc02325 0.56 -1.2 697,256 + SMc02325 0.66 -0.5 697,256 + SMc02325 0.66 +1.3 697,256 + SMc02325 0.66 -1.0 697,257 - SMc02325 0.66 +0.2 697,257 - SMc02325 0.66 +0.5 697,257 - SMc02325 0.66 +0.2 697,257 - SMc02325 0.66 +0.7 697,692 - -0.1 697,893 + SMc03000 0.12 +0.5 697,893 + SMc03000 0.12 +0.6 698,118 + SMc03000 0.35 +0.7 698,118 + SMc03000 0.35 +0.4 698,118 + SMc03000 0.35 -1.0 698,158 + SMc03000 0.39 -0.2 698,158 + SMc03000 0.39 +0.5 698,158 + SMc03000 0.39 -0.3 698,413 + SMc03000 0.65 -0.2 698,414 - SMc03000 0.66 +0.3 698,449 + SMc03000 0.69 +0.4 698,449 + SMc03000 0.69 +1.3 698,631 + SMc03000 0.88 -0.3 698,631 + SMc03000 0.88 +0.9 698,632 - SMc03000 0.88 +0.2 698,632 - SMc03000 0.88 +0.3 698,889 + SMc03001 0.14 +1.7 699,040 - SMc03001 0.29 -0.3 699,264 + SMc03001 0.51 -0.1 699,264 + SMc03001 0.51 +0.7 699,264 + SMc03001 0.51 -0.2 699,264 + SMc03001 0.51 +0.4 699,265 - SMc03001 0.51 +0.8 699,321 + SMc03001 0.57 +0.8 699,363 + SMc03001 0.61 -0.5 699,399 + SMc03001 0.64 +0.3
Or see this region's nucleotide sequence