Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02581 and SMc02582 are separated by 206 nucleotides SMc02582 and SMc02583 are separated by 63 nucleotides SMc02583 and SMc02584 are separated by 14 nucleotides
SMc02581: SMc02581 - malate synthase G, at 68,916 to 71,087
SMc02581
SMc02582: SMc02582 - hypothetical protein, at 71,294 to 72,130
SMc02582
SMc02583: SMc02583 - hypothetical protein, at 72,194 to 72,718
SMc02583
SMc02584: SMc02584 - transcriptional regulator, at 72,733 to 73,317
SMc02584
Position (kb) 71
72
73 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 70.378 kb on - strand, within SMc02581 at 70.566 kb on + strand, within SMc02581 at 70.635 kb on - strand, within SMc02581 at 70.725 kb on + strand, within SMc02581 at 70.725 kb on + strand, within SMc02581 at 70.725 kb on + strand, within SMc02581 at 70.726 kb on - strand, within SMc02581 at 70.726 kb on - strand, within SMc02581 at 70.832 kb on + strand, within SMc02581 at 70.833 kb on - strand, within SMc02581 at 71.028 kb on + strand at 71.085 kb on + strand at 71.085 kb on + strand at 71.086 kb on - strand at 71.201 kb on - strand at 71.343 kb on + strand at 71.343 kb on + strand at 71.343 kb on + strand at 71.469 kb on + strand, within SMc02582 at 71.526 kb on + strand, within SMc02582 at 71.605 kb on - strand, within SMc02582 at 71.658 kb on - strand, within SMc02582 at 71.682 kb on + strand, within SMc02582 at 71.843 kb on + strand, within SMc02582 at 71.843 kb on + strand, within SMc02582 at 71.843 kb on + strand, within SMc02582 at 72.034 kb on + strand, within SMc02582 at 72.204 kb on + strand at 72.204 kb on + strand at 72.204 kb on + strand at 72.204 kb on + strand at 72.204 kb on + strand at 72.204 kb on + strand at 72.205 kb on - strand at 72.205 kb on - strand at 72.205 kb on - strand at 72.205 kb on - strand at 72.205 kb on - strand at 72.205 kb on - strand at 72.265 kb on - strand, within SMc02583 at 72.537 kb on - strand, within SMc02583 at 72.547 kb on + strand, within SMc02583 at 72.547 kb on + strand, within SMc02583 at 72.547 kb on + strand, within SMc02583 at 72.547 kb on + strand, within SMc02583 at 72.547 kb on + strand, within SMc02583 at 72.548 kb on - strand, within SMc02583 at 72.548 kb on - strand, within SMc02583 at 72.548 kb on - strand, within SMc02583 at 72.717 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 70,378 - SMc02581 0.67 +0.2 70,566 + SMc02581 0.76 +0.0 70,635 - SMc02581 0.79 -0.0 70,725 + SMc02581 0.83 -0.3 70,725 + SMc02581 0.83 -0.7 70,725 + SMc02581 0.83 -0.0 70,726 - SMc02581 0.83 -0.1 70,726 - SMc02581 0.83 -0.4 70,832 + SMc02581 0.88 -0.3 70,833 - SMc02581 0.88 -0.7 71,028 + -0.9 71,085 + -1.3 71,085 + -1.5 71,086 - -0.1 71,201 - -0.1 71,343 + -0.3 71,343 + -2.1 71,343 + -1.0 71,469 + SMc02582 0.21 -2.8 71,526 + SMc02582 0.28 -0.7 71,605 - SMc02582 0.37 -2.9 71,658 - SMc02582 0.43 -2.5 71,682 + SMc02582 0.46 -0.7 71,843 + SMc02582 0.66 -1.0 71,843 + SMc02582 0.66 -0.7 71,843 + SMc02582 0.66 -0.1 72,034 + SMc02582 0.88 -2.1 72,204 + -0.5 72,204 + +1.1 72,204 + +0.3 72,204 + +0.3 72,204 + +0.0 72,204 + +1.9 72,205 - -0.1 72,205 - -0.2 72,205 - +0.4 72,205 - -1.5 72,205 - -0.3 72,205 - +0.9 72,265 - SMc02583 0.14 +1.9 72,537 - SMc02583 0.65 -0.5 72,547 + SMc02583 0.67 -0.1 72,547 + SMc02583 0.67 +0.9 72,547 + SMc02583 0.67 +0.9 72,547 + SMc02583 0.67 -0.0 72,547 + SMc02583 0.67 +0.4 72,548 - SMc02583 0.67 +1.2 72,548 - SMc02583 0.67 -0.5 72,548 - SMc02583 0.67 -0.8 72,717 - -0.7
Or see this region's nucleotide sequence