Strain Fitness in Sinorhizobium meliloti 1021 around SMc02101

Experiment: L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02102 and SMc02101 are separated by 185 nucleotidesSMc02101 and SMc02100 are separated by 252 nucleotides SMc02102: SMc02102 - hypothetical protein, at 1,606,753 to 1,607,571 SMc02102 SMc02101: SMc02101 - 30S ribosomal protein S2, at 1,607,757 to 1,608,524 SMc02101 SMc02100: SMc02100 - elongation factor Ts, at 1,608,777 to 1,609,700 SMc02100 Position (kb) 1607 1608 1609Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1606.909 kb on + strand, within SMc02102at 1606.909 kb on + strand, within SMc02102at 1606.924 kb on + strand, within SMc02102at 1606.954 kb on + strand, within SMc02102at 1606.955 kb on - strand, within SMc02102at 1606.955 kb on - strand, within SMc02102at 1607.033 kb on - strand, within SMc02102at 1607.386 kb on + strand, within SMc02102at 1607.386 kb on + strand, within SMc02102at 1607.569 kb on + strandat 1607.569 kb on + strandat 1607.570 kb on - strandat 1607.570 kb on - strandat 1607.570 kb on - strandat 1607.570 kb on - strandat 1608.615 kb on + strandat 1608.669 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine
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1,606,909 + SMc02102 0.19 -2.5
1,606,909 + SMc02102 0.19 -0.8
1,606,924 + SMc02102 0.21 -1.7
1,606,954 + SMc02102 0.25 -3.9
1,606,955 - SMc02102 0.25 -2.3
1,606,955 - SMc02102 0.25 -2.6
1,607,033 - SMc02102 0.34 -3.9
1,607,386 + SMc02102 0.77 -2.1
1,607,386 + SMc02102 0.77 -0.9
1,607,569 + -1.8
1,607,569 + -0.1
1,607,570 - +0.1
1,607,570 - +1.7
1,607,570 - -0.5
1,607,570 - +0.4
1,608,615 + -1.6
1,608,669 - -0.4

Or see this region's nucleotide sequence