Strain Fitness in Sinorhizobium meliloti 1021 around SMc01760

Experiment: L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01758 and SMc01759 are separated by 132 nucleotidesSMc01759 and SMc01760 are separated by 176 nucleotidesSMc01760 and SMc01761 are separated by 183 nucleotides SMc01758: SMc01758 - chaperonin GroEL, at 1,303,835 to 1,305,463 SMc01758 SMc01759: SMc01759 - hypothetical protein, at 1,305,596 to 1,305,814 SMc01759 SMc01760: SMc01760 - hypothetical protein, at 1,305,991 to 1,307,181 SMc01760 SMc01761: SMc01761 - DNA topoisomerase IV subunit A, at 1,307,365 to 1,309,641 SMc01761 Position (kb) 1305 1306 1307 1308Strain fitness (log2 ratio) -2 -1 0 1at 1305.170 kb on - strand, within SMc01758at 1305.182 kb on + strand, within SMc01758at 1305.182 kb on + strand, within SMc01758at 1305.259 kb on + strand, within SMc01758at 1305.465 kb on + strandat 1305.465 kb on + strandat 1305.465 kb on + strandat 1305.466 kb on - strandat 1305.466 kb on - strandat 1305.466 kb on - strandat 1305.466 kb on - strandat 1305.496 kb on + strandat 1305.496 kb on + strandat 1305.496 kb on + strandat 1305.496 kb on + strandat 1305.497 kb on - strandat 1305.704 kb on + strand, within SMc01759at 1305.871 kb on + strandat 1305.872 kb on - strandat 1305.876 kb on - strandat 1305.876 kb on - strandat 1305.876 kb on - strandat 1305.910 kb on + strandat 1305.910 kb on + strandat 1305.911 kb on - strandat 1305.982 kb on + strandat 1305.982 kb on + strandat 1306.320 kb on + strand, within SMc01760at 1306.320 kb on + strand, within SMc01760at 1306.438 kb on - strand, within SMc01760at 1306.448 kb on - strand, within SMc01760at 1306.448 kb on - strand, within SMc01760at 1306.702 kb on - strand, within SMc01760at 1306.739 kb on - strand, within SMc01760at 1306.769 kb on + strand, within SMc01760at 1306.770 kb on - strand, within SMc01760at 1306.904 kb on + strand, within SMc01760at 1306.951 kb on + strand, within SMc01760at 1306.952 kb on - strand, within SMc01760at 1307.039 kb on + strand, within SMc01760at 1307.040 kb on - strand, within SMc01760at 1307.172 kb on + strandat 1307.173 kb on - strandat 1307.173 kb on - strandat 1307.173 kb on - strandat 1307.176 kb on + strandat 1307.176 kb on + strandat 1307.176 kb on + strandat 1307.177 kb on - strandat 1307.317 kb on + strandat 1307.317 kb on + strandat 1307.317 kb on + strandat 1307.317 kb on + strandat 1307.318 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine
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1,305,170 - SMc01758 0.82 -0.3
1,305,182 + SMc01758 0.83 +0.3
1,305,182 + SMc01758 0.83 -0.1
1,305,259 + SMc01758 0.87 +0.7
1,305,465 + -0.6
1,305,465 + -0.6
1,305,465 + -0.3
1,305,466 - +1.7
1,305,466 - -0.2
1,305,466 - +0.4
1,305,466 - +0.2
1,305,496 + +0.7
1,305,496 + +0.2
1,305,496 + -0.7
1,305,496 + -0.3
1,305,497 - -1.7
1,305,704 + SMc01759 0.49 -1.3
1,305,871 + -0.1
1,305,872 - +0.2
1,305,876 - -0.2
1,305,876 - -0.4
1,305,876 - -0.7
1,305,910 + -1.8
1,305,910 + -2.1
1,305,911 - -0.3
1,305,982 + +0.3
1,305,982 + -0.2
1,306,320 + SMc01760 0.28 +0.7
1,306,320 + SMc01760 0.28 +0.8
1,306,438 - SMc01760 0.38 -0.3
1,306,448 - SMc01760 0.38 -0.3
1,306,448 - SMc01760 0.38 +0.7
1,306,702 - SMc01760 0.60 +0.0
1,306,739 - SMc01760 0.63 +1.4
1,306,769 + SMc01760 0.65 -0.0
1,306,770 - SMc01760 0.65 -0.3
1,306,904 + SMc01760 0.77 +0.1
1,306,951 + SMc01760 0.81 +0.7
1,306,952 - SMc01760 0.81 +0.7
1,307,039 + SMc01760 0.88 +0.2
1,307,040 - SMc01760 0.88 +0.2
1,307,172 + -0.9
1,307,173 - +0.7
1,307,173 - -0.0
1,307,173 - -0.2
1,307,176 + +0.2
1,307,176 + -0.3
1,307,176 + +0.6
1,307,177 - -0.4
1,307,317 + -0.0
1,307,317 + -0.0
1,307,317 + +0.3
1,307,317 + -1.1
1,307,318 - +0.3

Or see this region's nucleotide sequence