Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01758 and SMc01759 are separated by 132 nucleotides SMc01759 and SMc01760 are separated by 176 nucleotides SMc01760 and SMc01761 are separated by 183 nucleotides
SMc01758: SMc01758 - chaperonin GroEL, at 1,303,835 to 1,305,463
SMc01758
SMc01759: SMc01759 - hypothetical protein, at 1,305,596 to 1,305,814
SMc01759
SMc01760: SMc01760 - hypothetical protein, at 1,305,991 to 1,307,181
SMc01760
SMc01761: SMc01761 - DNA topoisomerase IV subunit A, at 1,307,365 to 1,309,641
SMc01761
Position (kb)
1305
1306
1307
1308 Strain fitness (log2 ratio)
-2
-1
0
1 at 1305.170 kb on - strand, within SMc01758 at 1305.182 kb on + strand, within SMc01758 at 1305.182 kb on + strand, within SMc01758 at 1305.259 kb on + strand, within SMc01758 at 1305.465 kb on + strand at 1305.465 kb on + strand at 1305.465 kb on + strand at 1305.466 kb on - strand at 1305.466 kb on - strand at 1305.466 kb on - strand at 1305.466 kb on - strand at 1305.496 kb on + strand at 1305.496 kb on + strand at 1305.496 kb on + strand at 1305.496 kb on + strand at 1305.497 kb on - strand at 1305.704 kb on + strand, within SMc01759 at 1305.871 kb on + strand at 1305.872 kb on - strand at 1305.876 kb on - strand at 1305.876 kb on - strand at 1305.876 kb on - strand at 1305.910 kb on + strand at 1305.910 kb on + strand at 1305.911 kb on - strand at 1305.982 kb on + strand at 1305.982 kb on + strand at 1306.320 kb on + strand, within SMc01760 at 1306.320 kb on + strand, within SMc01760 at 1306.438 kb on - strand, within SMc01760 at 1306.448 kb on - strand, within SMc01760 at 1306.448 kb on - strand, within SMc01760 at 1306.702 kb on - strand, within SMc01760 at 1306.739 kb on - strand, within SMc01760 at 1306.769 kb on + strand, within SMc01760 at 1306.770 kb on - strand, within SMc01760 at 1306.904 kb on + strand, within SMc01760 at 1306.951 kb on + strand, within SMc01760 at 1306.952 kb on - strand, within SMc01760 at 1307.039 kb on + strand, within SMc01760 at 1307.040 kb on - strand, within SMc01760 at 1307.172 kb on + strand at 1307.173 kb on - strand at 1307.173 kb on - strand at 1307.173 kb on - strand at 1307.176 kb on + strand at 1307.176 kb on + strand at 1307.176 kb on + strand at 1307.177 kb on - strand at 1307.317 kb on + strand at 1307.317 kb on + strand at 1307.317 kb on + strand at 1307.317 kb on + strand at 1307.318 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 1,305,170 - SMc01758 0.82 -0.3 1,305,182 + SMc01758 0.83 +0.3 1,305,182 + SMc01758 0.83 -0.1 1,305,259 + SMc01758 0.87 +0.7 1,305,465 + -0.6 1,305,465 + -0.6 1,305,465 + -0.3 1,305,466 - +1.7 1,305,466 - -0.2 1,305,466 - +0.4 1,305,466 - +0.2 1,305,496 + +0.7 1,305,496 + +0.2 1,305,496 + -0.7 1,305,496 + -0.3 1,305,497 - -1.7 1,305,704 + SMc01759 0.49 -1.3 1,305,871 + -0.1 1,305,872 - +0.2 1,305,876 - -0.2 1,305,876 - -0.4 1,305,876 - -0.7 1,305,910 + -1.8 1,305,910 + -2.1 1,305,911 - -0.3 1,305,982 + +0.3 1,305,982 + -0.2 1,306,320 + SMc01760 0.28 +0.7 1,306,320 + SMc01760 0.28 +0.8 1,306,438 - SMc01760 0.38 -0.3 1,306,448 - SMc01760 0.38 -0.3 1,306,448 - SMc01760 0.38 +0.7 1,306,702 - SMc01760 0.60 +0.0 1,306,739 - SMc01760 0.63 +1.4 1,306,769 + SMc01760 0.65 -0.0 1,306,770 - SMc01760 0.65 -0.3 1,306,904 + SMc01760 0.77 +0.1 1,306,951 + SMc01760 0.81 +0.7 1,306,952 - SMc01760 0.81 +0.7 1,307,039 + SMc01760 0.88 +0.2 1,307,040 - SMc01760 0.88 +0.2 1,307,172 + -0.9 1,307,173 - +0.7 1,307,173 - -0.0 1,307,173 - -0.2 1,307,176 + +0.2 1,307,176 + -0.3 1,307,176 + +0.6 1,307,177 - -0.4 1,307,317 + -0.0 1,307,317 + -0.0 1,307,317 + +0.3 1,307,317 + -1.1 1,307,318 - +0.3
Or see this region's nucleotide sequence