Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01125 and SMc01124 are separated by 101 nucleotides SMc01124 and SMc01123 overlap by 4 nucleotides
SMc01125: SMc01125 - DNA mismatch repair protein MutS, at 426,755 to 429,505
SMc01125
SMc01124: SMc01124 - PII uridylyl-transferase, at 429,607 to 432,456
SMc01124
SMc01123: SMc01123 - virulence factor MviN-like protein, at 432,453 to 434,060
SMc01123
Position (kb) 429
430
431
432
433 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 428.846 kb on - strand, within SMc01125 at 429.193 kb on - strand, within SMc01125 at 429.219 kb on - strand, within SMc01125 at 429.219 kb on - strand, within SMc01125 at 429.219 kb on - strand, within SMc01125 at 429.474 kb on - strand at 429.518 kb on - strand at 429.549 kb on + strand at 429.577 kb on + strand at 429.577 kb on + strand at 430.036 kb on + strand, within SMc01124 at 430.036 kb on + strand, within SMc01124 at 430.036 kb on + strand, within SMc01124 at 430.036 kb on + strand, within SMc01124 at 430.036 kb on + strand, within SMc01124 at 430.036 kb on + strand, within SMc01124 at 430.036 kb on + strand, within SMc01124 at 430.150 kb on + strand, within SMc01124 at 430.150 kb on + strand, within SMc01124 at 430.703 kb on + strand, within SMc01124 at 430.703 kb on + strand, within SMc01124 at 430.811 kb on + strand, within SMc01124 at 430.953 kb on + strand, within SMc01124 at 430.955 kb on + strand, within SMc01124 at 430.955 kb on + strand, within SMc01124 at 431.071 kb on + strand, within SMc01124 at 431.071 kb on + strand, within SMc01124 at 431.071 kb on + strand, within SMc01124 at 431.071 kb on + strand, within SMc01124 at 431.388 kb on + strand, within SMc01124 at 431.536 kb on + strand, within SMc01124 at 431.539 kb on + strand, within SMc01124 at 431.539 kb on + strand, within SMc01124 at 431.662 kb on + strand, within SMc01124 at 431.662 kb on + strand, within SMc01124 at 431.686 kb on + strand, within SMc01124 at 431.686 kb on + strand, within SMc01124 at 431.991 kb on + strand, within SMc01124 at 432.117 kb on + strand, within SMc01124 at 432.268 kb on + strand at 432.268 kb on + strand at 432.268 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 428,846 - SMc01125 0.76 +0.5 429,193 - SMc01125 0.89 -0.4 429,219 - SMc01125 0.90 -1.0 429,219 - SMc01125 0.90 +0.2 429,219 - SMc01125 0.90 -1.5 429,474 - -0.3 429,518 - -0.5 429,549 + +1.1 429,577 + -0.2 429,577 + -1.1 430,036 + SMc01124 0.15 -1.9 430,036 + SMc01124 0.15 -3.6 430,036 + SMc01124 0.15 -4.7 430,036 + SMc01124 0.15 -4.3 430,036 + SMc01124 0.15 -3.5 430,036 + SMc01124 0.15 -0.2 430,036 + SMc01124 0.15 -4.1 430,150 + SMc01124 0.19 -3.6 430,150 + SMc01124 0.19 -3.4 430,703 + SMc01124 0.38 +0.8 430,703 + SMc01124 0.38 -2.2 430,811 + SMc01124 0.42 -1.5 430,953 + SMc01124 0.47 -1.3 430,955 + SMc01124 0.47 -3.1 430,955 + SMc01124 0.47 -3.5 431,071 + SMc01124 0.51 -3.9 431,071 + SMc01124 0.51 -5.0 431,071 + SMc01124 0.51 -2.1 431,071 + SMc01124 0.51 -1.4 431,388 + SMc01124 0.62 -2.2 431,536 + SMc01124 0.68 -1.1 431,539 + SMc01124 0.68 -1.5 431,539 + SMc01124 0.68 -1.3 431,662 + SMc01124 0.72 -0.7 431,662 + SMc01124 0.72 -1.0 431,686 + SMc01124 0.73 -1.0 431,686 + SMc01124 0.73 -0.6 431,991 + SMc01124 0.84 +0.8 432,117 + SMc01124 0.88 -0.5 432,268 + +0.1 432,268 + -1.3 432,268 + -0.4
Or see this region's nucleotide sequence