Strain Fitness in Sinorhizobium meliloti 1021 around SMc00815

Experiment: L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00814 and SMc00815 are separated by 190 nucleotidesSMc00815 and SMc00816 are separated by 60 nucleotidesSMc00816 and SMc00817 are separated by 114 nucleotides SMc00814: SMc00814 - signal peptide protein, at 835,041 to 836,021 SMc00814 SMc00815: SMc00815 - inosine 5'-monophosphate dehydrogenase, at 836,212 to 837,714 SMc00815 SMc00816: SMc00816 - hypothetical protein, at 837,775 to 838,191 SMc00816 SMc00817: SMc00817 - carboxymethylenebutenolidase (dienelactone hydrolase) protein, at 838,306 to 839,181 SMc00817 Position (kb) 836 837 838Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 835.452 kb on + strand, within SMc00814at 835.452 kb on + strand, within SMc00814at 835.453 kb on - strand, within SMc00814at 835.506 kb on - strand, within SMc00814at 835.506 kb on - strand, within SMc00814at 835.554 kb on + strand, within SMc00814at 835.555 kb on - strand, within SMc00814at 835.555 kb on - strand, within SMc00814at 835.576 kb on - strand, within SMc00814at 835.745 kb on + strand, within SMc00814at 835.745 kb on + strand, within SMc00814at 835.745 kb on + strand, within SMc00814at 835.745 kb on + strand, within SMc00814at 835.745 kb on + strand, within SMc00814at 835.745 kb on + strand, within SMc00814at 835.746 kb on - strand, within SMc00814at 835.753 kb on - strand, within SMc00814at 835.809 kb on + strand, within SMc00814at 835.810 kb on - strand, within SMc00814at 835.810 kb on - strand, within SMc00814at 835.810 kb on - strand, within SMc00814at 835.810 kb on - strand, within SMc00814at 835.984 kb on - strandat 836.004 kb on + strandat 836.005 kb on - strandat 836.110 kb on + strandat 836.955 kb on + strand, within SMc00815at 837.448 kb on + strand, within SMc00815at 837.515 kb on - strand, within SMc00815at 837.578 kb on - strandat 837.605 kb on - strandat 837.715 kb on + strandat 837.715 kb on + strandat 838.208 kb on - strandat 838.232 kb on + strandat 838.233 kb on - strandat 838.266 kb on - strandat 838.266 kb on - strandat 838.266 kb on - strandat 838.345 kb on + strandat 838.354 kb on + strandat 838.354 kb on + strandat 838.355 kb on - strandat 838.356 kb on + strandat 838.356 kb on + strandat 838.357 kb on - strandat 838.497 kb on + strand, within SMc00817at 838.498 kb on - strand, within SMc00817at 838.631 kb on + strand, within SMc00817at 838.632 kb on - strand, within SMc00817at 838.632 kb on - strand, within SMc00817at 838.632 kb on - strand, within SMc00817at 838.632 kb on - strand, within SMc00817at 838.632 kb on - strand, within SMc00817

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine
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835,452 + SMc00814 0.42 -0.2
835,452 + SMc00814 0.42 -0.1
835,453 - SMc00814 0.42 +0.2
835,506 - SMc00814 0.47 -0.1
835,506 - SMc00814 0.47 +0.5
835,554 + SMc00814 0.52 +0.0
835,555 - SMc00814 0.52 +0.6
835,555 - SMc00814 0.52 +0.4
835,576 - SMc00814 0.55 -0.5
835,745 + SMc00814 0.72 +0.2
835,745 + SMc00814 0.72 -1.0
835,745 + SMc00814 0.72 +0.7
835,745 + SMc00814 0.72 +0.8
835,745 + SMc00814 0.72 +0.4
835,745 + SMc00814 0.72 -1.9
835,746 - SMc00814 0.72 +0.5
835,753 - SMc00814 0.73 +1.0
835,809 + SMc00814 0.78 +0.5
835,810 - SMc00814 0.78 -0.2
835,810 - SMc00814 0.78 +0.5
835,810 - SMc00814 0.78 -0.0
835,810 - SMc00814 0.78 -1.1
835,984 - +0.5
836,004 + +0.8
836,005 - +0.1
836,110 + -0.1
836,955 + SMc00815 0.49 -1.8
837,448 + SMc00815 0.82 -3.3
837,515 - SMc00815 0.87 -3.3
837,578 - -3.3
837,605 - -4.3
837,715 + +0.4
837,715 + +0.9
838,208 - -0.5
838,232 + +1.7
838,233 - -1.0
838,266 - -1.6
838,266 - -0.5
838,266 - -0.3
838,345 + -0.2
838,354 + -0.0
838,354 + +0.2
838,355 - -0.6
838,356 + +0.2
838,356 + -0.0
838,357 - -1.0
838,497 + SMc00817 0.22 +0.7
838,498 - SMc00817 0.22 +0.1
838,631 + SMc00817 0.37 -0.7
838,632 - SMc00817 0.37 -0.2
838,632 - SMc00817 0.37 -2.1
838,632 - SMc00817 0.37 +0.2
838,632 - SMc00817 0.37 -0.3
838,632 - SMc00817 0.37 -0.8

Or see this region's nucleotide sequence