Strain Fitness in Sinorhizobium meliloti 1021 around SMa2091

Experiment: L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa2087 and SMa2089 are separated by 13 nucleotidesSMa2089 and SMa2091 overlap by 10 nucleotidesSMa2091 and SMa2093 are separated by 9 nucleotides SMa2087: SMa2087 - desulfurization enzyme, at 1,178,362 to 1,179,402 SMa2087 SMa2089: SMa2089 - hypothetical protein, at 1,179,416 to 1,179,769 SMa2089 SMa2091: SMa2091 - hypothetical protein, at 1,179,760 to 1,180,647 SMa2091 SMa2093: SMa2093 - desulfurization enzyme, at 1,180,657 to 1,181,691 SMa2093 Position (kb) 1179 1180 1181Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1178.876 kb on - strand, within SMa2087at 1178.899 kb on + strand, within SMa2087at 1178.948 kb on - strand, within SMa2087at 1178.948 kb on - strand, within SMa2087at 1178.948 kb on - strand, within SMa2087at 1179.295 kb on + strand, within SMa2087at 1179.295 kb on + strand, within SMa2087at 1179.295 kb on + strand, within SMa2087at 1179.295 kb on + strand, within SMa2087at 1179.295 kb on + strand, within SMa2087at 1179.296 kb on - strand, within SMa2087at 1179.296 kb on - strand, within SMa2087at 1179.497 kb on + strand, within SMa2089at 1179.497 kb on + strand, within SMa2089at 1179.677 kb on + strand, within SMa2089at 1179.677 kb on + strand, within SMa2089at 1179.880 kb on + strand, within SMa2091at 1179.881 kb on - strand, within SMa2091at 1180.162 kb on + strand, within SMa2091at 1180.206 kb on + strand, within SMa2091at 1180.818 kb on + strand, within SMa2093at 1180.819 kb on - strand, within SMa2093at 1180.904 kb on + strand, within SMa2093at 1180.911 kb on - strand, within SMa2093at 1180.911 kb on - strand, within SMa2093at 1180.940 kb on + strand, within SMa2093at 1180.941 kb on - strand, within SMa2093at 1181.454 kb on + strand, within SMa2093at 1181.454 kb on + strand, within SMa2093

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine
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1,178,876 - SMa2087 0.49 -3.2
1,178,899 + SMa2087 0.52 -0.0
1,178,948 - SMa2087 0.56 -0.5
1,178,948 - SMa2087 0.56 +1.0
1,178,948 - SMa2087 0.56 -0.4
1,179,295 + SMa2087 0.90 -1.3
1,179,295 + SMa2087 0.90 -0.7
1,179,295 + SMa2087 0.90 +1.0
1,179,295 + SMa2087 0.90 -0.3
1,179,295 + SMa2087 0.90 -0.6
1,179,296 - SMa2087 0.90 -0.5
1,179,296 - SMa2087 0.90 -0.2
1,179,497 + SMa2089 0.23 -1.4
1,179,497 + SMa2089 0.23 -0.5
1,179,677 + SMa2089 0.74 +0.1
1,179,677 + SMa2089 0.74 +0.0
1,179,880 + SMa2091 0.14 +1.0
1,179,881 - SMa2091 0.14 +0.6
1,180,162 + SMa2091 0.45 +0.0
1,180,206 + SMa2091 0.50 +2.0
1,180,818 + SMa2093 0.16 +0.2
1,180,819 - SMa2093 0.16 +0.4
1,180,904 + SMa2093 0.24 +0.0
1,180,911 - SMa2093 0.25 +0.4
1,180,911 - SMa2093 0.25 -1.5
1,180,940 + SMa2093 0.27 -1.0
1,180,941 - SMa2093 0.27 +1.0
1,181,454 + SMa2093 0.77 -0.4
1,181,454 + SMa2093 0.77 -0.2

Or see this region's nucleotide sequence