Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0969 and SMa0972 are separated by 182 nucleotides SMa0972 and SMa0974 are separated by 54 nucleotides SMa0974 and SMa0976 are separated by 231 nucleotides
SMa0969: SMa0969 - Response regulator, at 540,997 to 541,746
SMa0969
SMa0972: SMa0972 - hypothetical protein, at 541,929 to 543,182
SMa0972
SMa0974: SMa0974 - hypothetical protein, at 543,237 to 543,596
SMa0974
SMa0976: SMa0976 - TRm3 transposase, at 543,828 to 544,616
SMa0976
Position (kb) 541
542
543
544 Strain fitness (log2 ratio) -2
-1
0
1
2 at 540.931 kb on + strand at 540.931 kb on + strand at 540.932 kb on - strand at 540.932 kb on - strand at 540.950 kb on + strand at 540.950 kb on + strand at 540.951 kb on - strand at 540.951 kb on - strand at 541.028 kb on - strand at 541.073 kb on - strand, within SMa0969 at 541.090 kb on - strand, within SMa0969 at 541.090 kb on - strand, within SMa0969 at 541.140 kb on - strand, within SMa0969 at 541.140 kb on - strand, within SMa0969 at 541.157 kb on + strand, within SMa0969 at 541.178 kb on + strand, within SMa0969 at 541.229 kb on + strand, within SMa0969 at 541.245 kb on - strand, within SMa0969 at 541.298 kb on - strand, within SMa0969 at 541.370 kb on - strand, within SMa0969 at 541.370 kb on - strand, within SMa0969 at 541.463 kb on + strand, within SMa0969 at 541.464 kb on - strand, within SMa0969 at 541.464 kb on - strand, within SMa0969 at 541.489 kb on + strand, within SMa0969 at 541.700 kb on + strand at 541.755 kb on - strand at 541.755 kb on - strand at 542.090 kb on - strand, within SMa0972 at 542.136 kb on + strand, within SMa0972 at 542.297 kb on + strand, within SMa0972 at 542.297 kb on + strand, within SMa0972 at 542.297 kb on + strand, within SMa0972 at 542.298 kb on - strand, within SMa0972 at 542.298 kb on - strand, within SMa0972 at 542.301 kb on + strand, within SMa0972 at 542.302 kb on - strand, within SMa0972 at 542.302 kb on - strand, within SMa0972 at 542.538 kb on + strand, within SMa0972 at 542.538 kb on + strand, within SMa0972 at 542.539 kb on - strand, within SMa0972 at 542.539 kb on - strand, within SMa0972 at 542.542 kb on - strand, within SMa0972 at 542.592 kb on + strand, within SMa0972 at 542.607 kb on + strand, within SMa0972 at 542.607 kb on + strand, within SMa0972 at 542.608 kb on - strand, within SMa0972 at 542.629 kb on + strand, within SMa0972 at 542.823 kb on - strand, within SMa0972 at 543.040 kb on - strand, within SMa0972 at 543.181 kb on - strand at 543.194 kb on + strand at 543.226 kb on - strand at 543.241 kb on - strand at 543.279 kb on - strand, within SMa0974 at 543.403 kb on + strand, within SMa0974 at 543.404 kb on - strand, within SMa0974 at 543.408 kb on - strand, within SMa0974 at 543.408 kb on - strand, within SMa0974 at 543.444 kb on + strand, within SMa0974 at 543.444 kb on + strand, within SMa0974 at 543.445 kb on - strand, within SMa0974 at 543.445 kb on - strand, within SMa0974 at 543.447 kb on + strand, within SMa0974 at 543.447 kb on + strand, within SMa0974 at 543.447 kb on + strand, within SMa0974 at 543.447 kb on + strand, within SMa0974 at 543.448 kb on - strand, within SMa0974 at 543.448 kb on - strand, within SMa0974 at 543.448 kb on - strand, within SMa0974 at 543.448 kb on - strand, within SMa0974 at 543.455 kb on - strand, within SMa0974 at 543.455 kb on - strand, within SMa0974 at 543.477 kb on - strand, within SMa0974 at 543.542 kb on + strand, within SMa0974 at 543.542 kb on + strand, within SMa0974 at 543.543 kb on - strand, within SMa0974 at 543.603 kb on - strand at 543.658 kb on + strand at 543.658 kb on + strand at 543.659 kb on - strand at 543.768 kb on + strand at 543.768 kb on + strand at 543.769 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 540,931 + -0.6 540,931 + -0.1 540,932 - -1.0 540,932 - -0.1 540,950 + +0.1 540,950 + -0.3 540,951 - -0.0 540,951 - +0.7 541,028 - -0.5 541,073 - SMa0969 0.10 +0.3 541,090 - SMa0969 0.12 -0.2 541,090 - SMa0969 0.12 -1.9 541,140 - SMa0969 0.19 -0.7 541,140 - SMa0969 0.19 +0.1 541,157 + SMa0969 0.21 -0.9 541,178 + SMa0969 0.24 +0.3 541,229 + SMa0969 0.31 +0.1 541,245 - SMa0969 0.33 -0.4 541,298 - SMa0969 0.40 +0.6 541,370 - SMa0969 0.50 +1.4 541,370 - SMa0969 0.50 +1.1 541,463 + SMa0969 0.62 -0.3 541,464 - SMa0969 0.62 +0.2 541,464 - SMa0969 0.62 -0.4 541,489 + SMa0969 0.66 +0.0 541,700 + -0.9 541,755 - -1.9 541,755 - -0.6 542,090 - SMa0972 0.13 -2.1 542,136 + SMa0972 0.17 +0.3 542,297 + SMa0972 0.29 +0.3 542,297 + SMa0972 0.29 -1.9 542,297 + SMa0972 0.29 -0.7 542,298 - SMa0972 0.29 +0.1 542,298 - SMa0972 0.29 -0.2 542,301 + SMa0972 0.30 -1.1 542,302 - SMa0972 0.30 -0.3 542,302 - SMa0972 0.30 -0.7 542,538 + SMa0972 0.49 +0.7 542,538 + SMa0972 0.49 -0.3 542,539 - SMa0972 0.49 +0.3 542,539 - SMa0972 0.49 -0.3 542,542 - SMa0972 0.49 -1.9 542,592 + SMa0972 0.53 -0.5 542,607 + SMa0972 0.54 +0.4 542,607 + SMa0972 0.54 -0.2 542,608 - SMa0972 0.54 -1.1 542,629 + SMa0972 0.56 -0.5 542,823 - SMa0972 0.71 -0.2 543,040 - SMa0972 0.89 -0.1 543,181 - +1.1 543,194 + -1.7 543,226 - -0.6 543,241 - -0.6 543,279 - SMa0974 0.12 +0.3 543,403 + SMa0974 0.46 -0.3 543,404 - SMa0974 0.46 +0.6 543,408 - SMa0974 0.47 +0.1 543,408 - SMa0974 0.47 -0.2 543,444 + SMa0974 0.57 +0.3 543,444 + SMa0974 0.57 +1.0 543,445 - SMa0974 0.58 +0.9 543,445 - SMa0974 0.58 -0.1 543,447 + SMa0974 0.58 -0.1 543,447 + SMa0974 0.58 -0.4 543,447 + SMa0974 0.58 -0.2 543,447 + SMa0974 0.58 -1.2 543,448 - SMa0974 0.59 -1.9 543,448 - SMa0974 0.59 +1.2 543,448 - SMa0974 0.59 -0.0 543,448 - SMa0974 0.59 -0.9 543,455 - SMa0974 0.61 +0.4 543,455 - SMa0974 0.61 +0.3 543,477 - SMa0974 0.67 +0.2 543,542 + SMa0974 0.85 -2.3 543,542 + SMa0974 0.85 -0.3 543,543 - SMa0974 0.85 +0.2 543,603 - +2.0 543,658 + -1.5 543,658 + +0.1 543,659 - +0.3 543,768 + +1.0 543,768 + -0.4 543,769 - -0.8
Or see this region's nucleotide sequence