Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21444 and SM_b21445 are separated by 404 nucleotides SM_b21445 and SM_b21446 overlap by 8 nucleotides
SM_b21444: SM_b21444 - osmotic sensory protein, at 1,372,331 to 1,373,074
_b21444
SM_b21445: SM_b21445 - DNA topoisomerase I protein, at 1,373,479 to 1,374,621
_b21445
SM_b21446: SM_b21446 - glycosyl hydrolase, at 1,374,614 to 1,376,710
_b21446
Position (kb)
1373
1374
1375 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1372.533 kb on - strand, within SM_b21444 at 1372.578 kb on - strand, within SM_b21444 at 1372.613 kb on + strand, within SM_b21444 at 1372.613 kb on + strand, within SM_b21444 at 1372.613 kb on + strand at 1372.629 kb on - strand, within SM_b21444 at 1372.914 kb on + strand, within SM_b21444 at 1373.016 kb on + strand at 1373.016 kb on + strand at 1373.017 kb on - strand at 1373.017 kb on - strand at 1373.038 kb on + strand at 1373.038 kb on + strand at 1373.038 kb on + strand at 1373.039 kb on - strand at 1373.039 kb on - strand at 1373.068 kb on + strand at 1373.110 kb on + strand at 1373.110 kb on + strand at 1373.186 kb on + strand at 1373.186 kb on + strand at 1373.187 kb on - strand at 1373.190 kb on + strand at 1373.190 kb on + strand at 1373.190 kb on + strand at 1373.191 kb on - strand at 1373.191 kb on - strand at 1373.253 kb on - strand at 1373.370 kb on + strand at 1373.370 kb on + strand at 1373.370 kb on + strand at 1373.481 kb on - strand at 1373.672 kb on + strand, within SM_b21445 at 1373.672 kb on + strand, within SM_b21445 at 1373.673 kb on - strand, within SM_b21445 at 1373.673 kb on - strand, within SM_b21445 at 1373.856 kb on - strand, within SM_b21445 at 1374.025 kb on + strand, within SM_b21445 at 1374.025 kb on + strand, within SM_b21445 at 1374.026 kb on - strand, within SM_b21445 at 1374.077 kb on + strand, within SM_b21445 at 1374.077 kb on + strand, within SM_b21445 at 1374.077 kb on + strand, within SM_b21445 at 1374.077 kb on + strand, within SM_b21445 at 1374.077 kb on + strand, within SM_b21445 at 1374.077 kb on + strand, within SM_b21445 at 1374.078 kb on - strand, within SM_b21445 at 1374.078 kb on - strand, within SM_b21445 at 1374.078 kb on - strand, within SM_b21445 at 1374.078 kb on - strand, within SM_b21445 at 1374.098 kb on + strand, within SM_b21445 at 1374.099 kb on - strand, within SM_b21445 at 1374.099 kb on - strand, within SM_b21445 at 1374.099 kb on - strand, within SM_b21445 at 1374.099 kb on - strand, within SM_b21445 at 1374.212 kb on - strand, within SM_b21445 at 1374.375 kb on - strand, within SM_b21445 at 1374.401 kb on - strand, within SM_b21445 at 1374.509 kb on + strand at 1374.510 kb on - strand at 1374.615 kb on + strand at 1374.667 kb on + strand at 1374.767 kb on + strand at 1374.768 kb on - strand at 1374.847 kb on + strand, within SM_b21446 at 1374.847 kb on + strand, within SM_b21446 at 1374.847 kb on + strand, within SM_b21446 at 1374.848 kb on - strand, within SM_b21446 at 1374.849 kb on + strand, within SM_b21446 at 1374.850 kb on - strand, within SM_b21446 at 1374.850 kb on - strand, within SM_b21446 at 1374.850 kb on - strand, within SM_b21446 at 1374.918 kb on + strand, within SM_b21446 at 1374.918 kb on + strand, within SM_b21446 at 1374.918 kb on + strand, within SM_b21446 at 1374.919 kb on - strand, within SM_b21446 at 1374.919 kb on - strand, within SM_b21446 at 1374.926 kb on + strand, within SM_b21446 at 1374.926 kb on + strand, within SM_b21446 at 1374.927 kb on - strand, within SM_b21446 at 1375.086 kb on + strand, within SM_b21446 at 1375.086 kb on + strand, within SM_b21446 at 1375.086 kb on + strand, within SM_b21446 at 1375.086 kb on + strand, within SM_b21446 at 1375.086 kb on + strand, within SM_b21446 at 1375.086 kb on + strand, within SM_b21446
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 1,372,533 - SM_b21444 0.27 -0.1 1,372,578 - SM_b21444 0.33 -0.1 1,372,613 + SM_b21444 0.38 -0.3 1,372,613 + SM_b21444 0.38 +0.9 1,372,613 + -0.2 1,372,629 - SM_b21444 0.40 -0.7 1,372,914 + SM_b21444 0.78 -0.3 1,373,016 + -0.3 1,373,016 + -0.2 1,373,017 - +0.1 1,373,017 - -0.4 1,373,038 + -0.6 1,373,038 + -0.1 1,373,038 + +0.1 1,373,039 - +0.8 1,373,039 - -0.6 1,373,068 + +0.8 1,373,110 + -0.0 1,373,110 + +0.2 1,373,186 + -1.2 1,373,186 + +0.2 1,373,187 - -0.2 1,373,190 + +0.1 1,373,190 + -1.5 1,373,190 + -0.3 1,373,191 - -0.3 1,373,191 - -0.3 1,373,253 - -1.1 1,373,370 + +0.3 1,373,370 + +0.7 1,373,370 + -0.0 1,373,481 - -1.6 1,373,672 + SM_b21445 0.17 -0.4 1,373,672 + SM_b21445 0.17 -0.7 1,373,673 - SM_b21445 0.17 -0.1 1,373,673 - SM_b21445 0.17 +0.1 1,373,856 - SM_b21445 0.33 -0.1 1,374,025 + SM_b21445 0.48 -0.6 1,374,025 + SM_b21445 0.48 +0.5 1,374,026 - SM_b21445 0.48 -0.9 1,374,077 + SM_b21445 0.52 -0.0 1,374,077 + SM_b21445 0.52 -0.2 1,374,077 + SM_b21445 0.52 -2.2 1,374,077 + SM_b21445 0.52 -0.5 1,374,077 + SM_b21445 0.52 +0.5 1,374,077 + SM_b21445 0.52 +0.9 1,374,078 - SM_b21445 0.52 -0.8 1,374,078 - SM_b21445 0.52 +0.0 1,374,078 - SM_b21445 0.52 -0.6 1,374,078 - SM_b21445 0.52 -0.4 1,374,098 + SM_b21445 0.54 -0.6 1,374,099 - SM_b21445 0.54 -0.8 1,374,099 - SM_b21445 0.54 +0.1 1,374,099 - SM_b21445 0.54 -0.1 1,374,099 - SM_b21445 0.54 -2.5 1,374,212 - SM_b21445 0.64 -1.0 1,374,375 - SM_b21445 0.78 -0.0 1,374,401 - SM_b21445 0.81 -0.6 1,374,509 + -0.1 1,374,510 - -0.1 1,374,615 + +0.4 1,374,667 + -0.6 1,374,767 + -0.9 1,374,768 - +0.8 1,374,847 + SM_b21446 0.11 -0.1 1,374,847 + SM_b21446 0.11 -1.9 1,374,847 + SM_b21446 0.11 -0.6 1,374,848 - SM_b21446 0.11 -0.8 1,374,849 + SM_b21446 0.11 -1.4 1,374,850 - SM_b21446 0.11 +0.8 1,374,850 - SM_b21446 0.11 -0.7 1,374,850 - SM_b21446 0.11 +0.4 1,374,918 + SM_b21446 0.14 -0.3 1,374,918 + SM_b21446 0.14 +0.3 1,374,918 + SM_b21446 0.14 +0.0 1,374,919 - SM_b21446 0.15 +0.2 1,374,919 - SM_b21446 0.15 +0.3 1,374,926 + SM_b21446 0.15 +0.4 1,374,926 + SM_b21446 0.15 +0.3 1,374,927 - SM_b21446 0.15 -0.3 1,375,086 + SM_b21446 0.23 +0.8 1,375,086 + SM_b21446 0.23 -0.6 1,375,086 + SM_b21446 0.23 -1.2 1,375,086 + SM_b21446 0.23 -0.6 1,375,086 + SM_b21446 0.23 -0.0 1,375,086 + SM_b21446 0.23 +2.3
Or see this region's nucleotide sequence