Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21445

Experiment: L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21444 and SM_b21445 are separated by 404 nucleotidesSM_b21445 and SM_b21446 overlap by 8 nucleotides SM_b21444: SM_b21444 - osmotic sensory protein, at 1,372,331 to 1,373,074 _b21444 SM_b21445: SM_b21445 - DNA topoisomerase I protein, at 1,373,479 to 1,374,621 _b21445 SM_b21446: SM_b21446 - glycosyl hydrolase, at 1,374,614 to 1,376,710 _b21446 Position (kb) 1373 1374 1375Strain fitness (log2 ratio) -2 -1 0 1 2at 1372.533 kb on - strand, within SM_b21444at 1372.578 kb on - strand, within SM_b21444at 1372.613 kb on + strand, within SM_b21444at 1372.613 kb on + strand, within SM_b21444at 1372.613 kb on + strandat 1372.629 kb on - strand, within SM_b21444at 1372.914 kb on + strand, within SM_b21444at 1373.016 kb on + strandat 1373.016 kb on + strandat 1373.017 kb on - strandat 1373.017 kb on - strandat 1373.038 kb on + strandat 1373.038 kb on + strandat 1373.038 kb on + strandat 1373.039 kb on - strandat 1373.039 kb on - strandat 1373.068 kb on + strandat 1373.110 kb on + strandat 1373.110 kb on + strandat 1373.186 kb on + strandat 1373.186 kb on + strandat 1373.187 kb on - strandat 1373.190 kb on + strandat 1373.190 kb on + strandat 1373.190 kb on + strandat 1373.191 kb on - strandat 1373.191 kb on - strandat 1373.253 kb on - strandat 1373.370 kb on + strandat 1373.370 kb on + strandat 1373.370 kb on + strandat 1373.481 kb on - strandat 1373.672 kb on + strand, within SM_b21445at 1373.672 kb on + strand, within SM_b21445at 1373.673 kb on - strand, within SM_b21445at 1373.673 kb on - strand, within SM_b21445at 1373.856 kb on - strand, within SM_b21445at 1374.025 kb on + strand, within SM_b21445at 1374.025 kb on + strand, within SM_b21445at 1374.026 kb on - strand, within SM_b21445at 1374.077 kb on + strand, within SM_b21445at 1374.077 kb on + strand, within SM_b21445at 1374.077 kb on + strand, within SM_b21445at 1374.077 kb on + strand, within SM_b21445at 1374.077 kb on + strand, within SM_b21445at 1374.077 kb on + strand, within SM_b21445at 1374.078 kb on - strand, within SM_b21445at 1374.078 kb on - strand, within SM_b21445at 1374.078 kb on - strand, within SM_b21445at 1374.078 kb on - strand, within SM_b21445at 1374.098 kb on + strand, within SM_b21445at 1374.099 kb on - strand, within SM_b21445at 1374.099 kb on - strand, within SM_b21445at 1374.099 kb on - strand, within SM_b21445at 1374.099 kb on - strand, within SM_b21445at 1374.212 kb on - strand, within SM_b21445at 1374.375 kb on - strand, within SM_b21445at 1374.401 kb on - strand, within SM_b21445at 1374.509 kb on + strandat 1374.510 kb on - strandat 1374.615 kb on + strandat 1374.667 kb on + strandat 1374.767 kb on + strandat 1374.768 kb on - strandat 1374.847 kb on + strand, within SM_b21446at 1374.847 kb on + strand, within SM_b21446at 1374.847 kb on + strand, within SM_b21446at 1374.848 kb on - strand, within SM_b21446at 1374.849 kb on + strand, within SM_b21446at 1374.850 kb on - strand, within SM_b21446at 1374.850 kb on - strand, within SM_b21446at 1374.850 kb on - strand, within SM_b21446at 1374.918 kb on + strand, within SM_b21446at 1374.918 kb on + strand, within SM_b21446at 1374.918 kb on + strand, within SM_b21446at 1374.919 kb on - strand, within SM_b21446at 1374.919 kb on - strand, within SM_b21446at 1374.926 kb on + strand, within SM_b21446at 1374.926 kb on + strand, within SM_b21446at 1374.927 kb on - strand, within SM_b21446at 1375.086 kb on + strand, within SM_b21446at 1375.086 kb on + strand, within SM_b21446at 1375.086 kb on + strand, within SM_b21446at 1375.086 kb on + strand, within SM_b21446at 1375.086 kb on + strand, within SM_b21446at 1375.086 kb on + strand, within SM_b21446

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine
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1,372,533 - SM_b21444 0.27 -0.1
1,372,578 - SM_b21444 0.33 -0.1
1,372,613 + SM_b21444 0.38 -0.3
1,372,613 + SM_b21444 0.38 +0.9
1,372,613 + -0.2
1,372,629 - SM_b21444 0.40 -0.7
1,372,914 + SM_b21444 0.78 -0.3
1,373,016 + -0.3
1,373,016 + -0.2
1,373,017 - +0.1
1,373,017 - -0.4
1,373,038 + -0.6
1,373,038 + -0.1
1,373,038 + +0.1
1,373,039 - +0.8
1,373,039 - -0.6
1,373,068 + +0.8
1,373,110 + -0.0
1,373,110 + +0.2
1,373,186 + -1.2
1,373,186 + +0.2
1,373,187 - -0.2
1,373,190 + +0.1
1,373,190 + -1.5
1,373,190 + -0.3
1,373,191 - -0.3
1,373,191 - -0.3
1,373,253 - -1.1
1,373,370 + +0.3
1,373,370 + +0.7
1,373,370 + -0.0
1,373,481 - -1.6
1,373,672 + SM_b21445 0.17 -0.4
1,373,672 + SM_b21445 0.17 -0.7
1,373,673 - SM_b21445 0.17 -0.1
1,373,673 - SM_b21445 0.17 +0.1
1,373,856 - SM_b21445 0.33 -0.1
1,374,025 + SM_b21445 0.48 -0.6
1,374,025 + SM_b21445 0.48 +0.5
1,374,026 - SM_b21445 0.48 -0.9
1,374,077 + SM_b21445 0.52 -0.0
1,374,077 + SM_b21445 0.52 -0.2
1,374,077 + SM_b21445 0.52 -2.2
1,374,077 + SM_b21445 0.52 -0.5
1,374,077 + SM_b21445 0.52 +0.5
1,374,077 + SM_b21445 0.52 +0.9
1,374,078 - SM_b21445 0.52 -0.8
1,374,078 - SM_b21445 0.52 +0.0
1,374,078 - SM_b21445 0.52 -0.6
1,374,078 - SM_b21445 0.52 -0.4
1,374,098 + SM_b21445 0.54 -0.6
1,374,099 - SM_b21445 0.54 -0.8
1,374,099 - SM_b21445 0.54 +0.1
1,374,099 - SM_b21445 0.54 -0.1
1,374,099 - SM_b21445 0.54 -2.5
1,374,212 - SM_b21445 0.64 -1.0
1,374,375 - SM_b21445 0.78 -0.0
1,374,401 - SM_b21445 0.81 -0.6
1,374,509 + -0.1
1,374,510 - -0.1
1,374,615 + +0.4
1,374,667 + -0.6
1,374,767 + -0.9
1,374,768 - +0.8
1,374,847 + SM_b21446 0.11 -0.1
1,374,847 + SM_b21446 0.11 -1.9
1,374,847 + SM_b21446 0.11 -0.6
1,374,848 - SM_b21446 0.11 -0.8
1,374,849 + SM_b21446 0.11 -1.4
1,374,850 - SM_b21446 0.11 +0.8
1,374,850 - SM_b21446 0.11 -0.7
1,374,850 - SM_b21446 0.11 +0.4
1,374,918 + SM_b21446 0.14 -0.3
1,374,918 + SM_b21446 0.14 +0.3
1,374,918 + SM_b21446 0.14 +0.0
1,374,919 - SM_b21446 0.15 +0.2
1,374,919 - SM_b21446 0.15 +0.3
1,374,926 + SM_b21446 0.15 +0.4
1,374,926 + SM_b21446 0.15 +0.3
1,374,927 - SM_b21446 0.15 -0.3
1,375,086 + SM_b21446 0.23 +0.8
1,375,086 + SM_b21446 0.23 -0.6
1,375,086 + SM_b21446 0.23 -1.2
1,375,086 + SM_b21446 0.23 -0.6
1,375,086 + SM_b21446 0.23 -0.0
1,375,086 + SM_b21446 0.23 +2.3

Or see this region's nucleotide sequence