Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21354 and SM_b21355 are separated by 158 nucleotides SM_b21355 and SM_b21356 are separated by 94 nucleotides
SM_b21354: SM_b21354 - glucuronate isomerase, at 1,019,495 to 1,020,904
_b21354
SM_b21355: SM_b21355 - oxidoreductase, at 1,021,063 to 1,022,082
_b21355
SM_b21356: SM_b21356 - hypothetical protein, at 1,022,177 to 1,023,169
_b21356
Position (kb)
1021
1022
1023 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1020.324 kb on + strand, within SM_b21354 at 1020.489 kb on + strand, within SM_b21354 at 1020.489 kb on + strand, within SM_b21354 at 1020.490 kb on - strand, within SM_b21354 at 1020.490 kb on - strand, within SM_b21354 at 1020.550 kb on + strand, within SM_b21354 at 1020.550 kb on + strand, within SM_b21354 at 1020.551 kb on - strand, within SM_b21354 at 1020.551 kb on - strand, within SM_b21354 at 1020.551 kb on - strand, within SM_b21354 at 1020.553 kb on - strand, within SM_b21354 at 1020.553 kb on - strand, within SM_b21354 at 1020.553 kb on - strand, within SM_b21354 at 1020.553 kb on - strand, within SM_b21354 at 1020.594 kb on + strand, within SM_b21354 at 1020.595 kb on - strand, within SM_b21354 at 1020.595 kb on - strand, within SM_b21354 at 1020.595 kb on - strand, within SM_b21354 at 1020.595 kb on - strand, within SM_b21354 at 1020.714 kb on + strand, within SM_b21354 at 1020.715 kb on - strand, within SM_b21354 at 1020.715 kb on - strand, within SM_b21354 at 1020.715 kb on - strand, within SM_b21354 at 1020.771 kb on + strand at 1020.772 kb on - strand at 1020.787 kb on + strand at 1020.787 kb on + strand at 1020.788 kb on - strand at 1020.821 kb on + strand at 1020.822 kb on - strand at 1020.831 kb on + strand at 1020.832 kb on - strand at 1020.833 kb on + strand at 1020.833 kb on + strand at 1020.833 kb on + strand at 1020.833 kb on + strand at 1020.833 kb on + strand at 1020.834 kb on - strand at 1020.905 kb on + strand at 1020.906 kb on - strand at 1020.928 kb on + strand at 1020.929 kb on - strand at 1020.929 kb on - strand at 1020.929 kb on - strand at 1020.929 kb on - strand at 1020.934 kb on - strand at 1021.021 kb on + strand at 1021.207 kb on + strand, within SM_b21355 at 1021.274 kb on + strand, within SM_b21355 at 1021.274 kb on + strand, within SM_b21355 at 1021.275 kb on - strand, within SM_b21355 at 1021.413 kb on - strand, within SM_b21355 at 1021.543 kb on + strand, within SM_b21355 at 1021.543 kb on + strand, within SM_b21355 at 1021.544 kb on - strand, within SM_b21355 at 1021.544 kb on - strand, within SM_b21355 at 1021.611 kb on - strand, within SM_b21355 at 1021.666 kb on + strand, within SM_b21355 at 1021.667 kb on - strand, within SM_b21355 at 1021.796 kb on + strand, within SM_b21355 at 1021.797 kb on - strand, within SM_b21355 at 1021.802 kb on + strand, within SM_b21355 at 1021.803 kb on - strand, within SM_b21355 at 1021.803 kb on - strand, within SM_b21355 at 1022.105 kb on + strand at 1022.105 kb on + strand at 1022.106 kb on - strand at 1022.125 kb on - strand at 1022.335 kb on - strand, within SM_b21356 at 1022.346 kb on + strand, within SM_b21356 at 1022.346 kb on + strand, within SM_b21356 at 1022.347 kb on - strand, within SM_b21356 at 1022.347 kb on - strand, within SM_b21356 at 1022.347 kb on - strand, within SM_b21356 at 1022.347 kb on - strand, within SM_b21356 at 1022.354 kb on + strand, within SM_b21356 at 1022.355 kb on - strand, within SM_b21356 at 1022.739 kb on + strand at 1022.748 kb on - strand, within SM_b21356 at 1022.902 kb on + strand, within SM_b21356 at 1022.942 kb on + strand, within SM_b21356 at 1022.943 kb on - strand, within SM_b21356 at 1022.966 kb on + strand, within SM_b21356 at 1022.966 kb on + strand, within SM_b21356 at 1022.967 kb on - strand, within SM_b21356 at 1022.967 kb on - strand, within SM_b21356 at 1022.979 kb on - strand, within SM_b21356
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 1,020,324 + SM_b21354 0.59 +0.5 1,020,489 + SM_b21354 0.70 +0.8 1,020,489 + SM_b21354 0.70 +0.8 1,020,490 - SM_b21354 0.71 -1.5 1,020,490 - SM_b21354 0.71 +1.7 1,020,550 + SM_b21354 0.75 -1.1 1,020,550 + SM_b21354 0.75 +0.0 1,020,551 - SM_b21354 0.75 -0.8 1,020,551 - SM_b21354 0.75 -0.1 1,020,551 - SM_b21354 0.75 -1.5 1,020,553 - SM_b21354 0.75 +0.0 1,020,553 - SM_b21354 0.75 +0.6 1,020,553 - SM_b21354 0.75 -0.6 1,020,553 - SM_b21354 0.75 -0.1 1,020,594 + SM_b21354 0.78 +2.4 1,020,595 - SM_b21354 0.78 -0.5 1,020,595 - SM_b21354 0.78 +0.7 1,020,595 - SM_b21354 0.78 +0.2 1,020,595 - SM_b21354 0.78 +0.1 1,020,714 + SM_b21354 0.86 +0.0 1,020,715 - SM_b21354 0.87 +1.1 1,020,715 - SM_b21354 0.87 -0.1 1,020,715 - SM_b21354 0.87 -0.2 1,020,771 + -0.5 1,020,772 - -0.5 1,020,787 + +1.0 1,020,787 + -1.6 1,020,788 - -2.0 1,020,821 + +1.2 1,020,822 - -0.1 1,020,831 + -0.0 1,020,832 - -0.5 1,020,833 + +0.7 1,020,833 + -1.8 1,020,833 + -0.8 1,020,833 + -0.2 1,020,833 + +0.2 1,020,834 - -0.4 1,020,905 + +3.1 1,020,906 - -1.0 1,020,928 + +0.6 1,020,929 - -0.1 1,020,929 - -0.4 1,020,929 - -0.1 1,020,929 - +0.8 1,020,934 - -0.4 1,021,021 + -0.0 1,021,207 + SM_b21355 0.14 +0.5 1,021,274 + SM_b21355 0.21 -1.2 1,021,274 + SM_b21355 0.21 +0.4 1,021,275 - SM_b21355 0.21 +0.1 1,021,413 - SM_b21355 0.34 +0.1 1,021,543 + SM_b21355 0.47 +1.1 1,021,543 + SM_b21355 0.47 +0.3 1,021,544 - SM_b21355 0.47 +0.3 1,021,544 - SM_b21355 0.47 +0.2 1,021,611 - SM_b21355 0.54 +0.0 1,021,666 + SM_b21355 0.59 -0.0 1,021,667 - SM_b21355 0.59 +1.3 1,021,796 + SM_b21355 0.72 -0.2 1,021,797 - SM_b21355 0.72 +1.5 1,021,802 + SM_b21355 0.72 -1.2 1,021,803 - SM_b21355 0.73 -1.0 1,021,803 - SM_b21355 0.73 +0.3 1,022,105 + +1.2 1,022,105 + +0.5 1,022,106 - -0.4 1,022,125 - +0.3 1,022,335 - SM_b21356 0.16 +0.8 1,022,346 + SM_b21356 0.17 +1.1 1,022,346 + SM_b21356 0.17 -0.2 1,022,347 - SM_b21356 0.17 +0.6 1,022,347 - SM_b21356 0.17 -0.6 1,022,347 - SM_b21356 0.17 -0.2 1,022,347 - SM_b21356 0.17 -0.4 1,022,354 + SM_b21356 0.18 -0.2 1,022,355 - SM_b21356 0.18 +0.7 1,022,739 + +1.1 1,022,748 - SM_b21356 0.58 +1.0 1,022,902 + SM_b21356 0.73 +0.8 1,022,942 + SM_b21356 0.77 +0.7 1,022,943 - SM_b21356 0.77 +0.3 1,022,966 + SM_b21356 0.79 +0.1 1,022,966 + SM_b21356 0.79 -1.2 1,022,967 - SM_b21356 0.80 -0.5 1,022,967 - SM_b21356 0.80 +0.6 1,022,979 - SM_b21356 0.81 +0.1
Or see this region's nucleotide sequence