Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21355

Experiment: L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21354 and SM_b21355 are separated by 158 nucleotidesSM_b21355 and SM_b21356 are separated by 94 nucleotides SM_b21354: SM_b21354 - glucuronate isomerase, at 1,019,495 to 1,020,904 _b21354 SM_b21355: SM_b21355 - oxidoreductase, at 1,021,063 to 1,022,082 _b21355 SM_b21356: SM_b21356 - hypothetical protein, at 1,022,177 to 1,023,169 _b21356 Position (kb) 1021 1022 1023Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1020.324 kb on + strand, within SM_b21354at 1020.489 kb on + strand, within SM_b21354at 1020.489 kb on + strand, within SM_b21354at 1020.490 kb on - strand, within SM_b21354at 1020.490 kb on - strand, within SM_b21354at 1020.550 kb on + strand, within SM_b21354at 1020.550 kb on + strand, within SM_b21354at 1020.551 kb on - strand, within SM_b21354at 1020.551 kb on - strand, within SM_b21354at 1020.551 kb on - strand, within SM_b21354at 1020.553 kb on - strand, within SM_b21354at 1020.553 kb on - strand, within SM_b21354at 1020.553 kb on - strand, within SM_b21354at 1020.553 kb on - strand, within SM_b21354at 1020.594 kb on + strand, within SM_b21354at 1020.595 kb on - strand, within SM_b21354at 1020.595 kb on - strand, within SM_b21354at 1020.595 kb on - strand, within SM_b21354at 1020.595 kb on - strand, within SM_b21354at 1020.714 kb on + strand, within SM_b21354at 1020.715 kb on - strand, within SM_b21354at 1020.715 kb on - strand, within SM_b21354at 1020.715 kb on - strand, within SM_b21354at 1020.771 kb on + strandat 1020.772 kb on - strandat 1020.787 kb on + strandat 1020.787 kb on + strandat 1020.788 kb on - strandat 1020.821 kb on + strandat 1020.822 kb on - strandat 1020.831 kb on + strandat 1020.832 kb on - strandat 1020.833 kb on + strandat 1020.833 kb on + strandat 1020.833 kb on + strandat 1020.833 kb on + strandat 1020.833 kb on + strandat 1020.834 kb on - strandat 1020.905 kb on + strandat 1020.906 kb on - strandat 1020.928 kb on + strandat 1020.929 kb on - strandat 1020.929 kb on - strandat 1020.929 kb on - strandat 1020.929 kb on - strandat 1020.934 kb on - strandat 1021.021 kb on + strandat 1021.207 kb on + strand, within SM_b21355at 1021.274 kb on + strand, within SM_b21355at 1021.274 kb on + strand, within SM_b21355at 1021.275 kb on - strand, within SM_b21355at 1021.413 kb on - strand, within SM_b21355at 1021.543 kb on + strand, within SM_b21355at 1021.543 kb on + strand, within SM_b21355at 1021.544 kb on - strand, within SM_b21355at 1021.544 kb on - strand, within SM_b21355at 1021.611 kb on - strand, within SM_b21355at 1021.666 kb on + strand, within SM_b21355at 1021.667 kb on - strand, within SM_b21355at 1021.796 kb on + strand, within SM_b21355at 1021.797 kb on - strand, within SM_b21355at 1021.802 kb on + strand, within SM_b21355at 1021.803 kb on - strand, within SM_b21355at 1021.803 kb on - strand, within SM_b21355at 1022.105 kb on + strandat 1022.105 kb on + strandat 1022.106 kb on - strandat 1022.125 kb on - strandat 1022.335 kb on - strand, within SM_b21356at 1022.346 kb on + strand, within SM_b21356at 1022.346 kb on + strand, within SM_b21356at 1022.347 kb on - strand, within SM_b21356at 1022.347 kb on - strand, within SM_b21356at 1022.347 kb on - strand, within SM_b21356at 1022.347 kb on - strand, within SM_b21356at 1022.354 kb on + strand, within SM_b21356at 1022.355 kb on - strand, within SM_b21356at 1022.739 kb on + strandat 1022.748 kb on - strand, within SM_b21356at 1022.902 kb on + strand, within SM_b21356at 1022.942 kb on + strand, within SM_b21356at 1022.943 kb on - strand, within SM_b21356at 1022.966 kb on + strand, within SM_b21356at 1022.966 kb on + strand, within SM_b21356at 1022.967 kb on - strand, within SM_b21356at 1022.967 kb on - strand, within SM_b21356at 1022.979 kb on - strand, within SM_b21356

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine
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1,020,324 + SM_b21354 0.59 +0.5
1,020,489 + SM_b21354 0.70 +0.8
1,020,489 + SM_b21354 0.70 +0.8
1,020,490 - SM_b21354 0.71 -1.5
1,020,490 - SM_b21354 0.71 +1.7
1,020,550 + SM_b21354 0.75 -1.1
1,020,550 + SM_b21354 0.75 +0.0
1,020,551 - SM_b21354 0.75 -0.8
1,020,551 - SM_b21354 0.75 -0.1
1,020,551 - SM_b21354 0.75 -1.5
1,020,553 - SM_b21354 0.75 +0.0
1,020,553 - SM_b21354 0.75 +0.6
1,020,553 - SM_b21354 0.75 -0.6
1,020,553 - SM_b21354 0.75 -0.1
1,020,594 + SM_b21354 0.78 +2.4
1,020,595 - SM_b21354 0.78 -0.5
1,020,595 - SM_b21354 0.78 +0.7
1,020,595 - SM_b21354 0.78 +0.2
1,020,595 - SM_b21354 0.78 +0.1
1,020,714 + SM_b21354 0.86 +0.0
1,020,715 - SM_b21354 0.87 +1.1
1,020,715 - SM_b21354 0.87 -0.1
1,020,715 - SM_b21354 0.87 -0.2
1,020,771 + -0.5
1,020,772 - -0.5
1,020,787 + +1.0
1,020,787 + -1.6
1,020,788 - -2.0
1,020,821 + +1.2
1,020,822 - -0.1
1,020,831 + -0.0
1,020,832 - -0.5
1,020,833 + +0.7
1,020,833 + -1.8
1,020,833 + -0.8
1,020,833 + -0.2
1,020,833 + +0.2
1,020,834 - -0.4
1,020,905 + +3.1
1,020,906 - -1.0
1,020,928 + +0.6
1,020,929 - -0.1
1,020,929 - -0.4
1,020,929 - -0.1
1,020,929 - +0.8
1,020,934 - -0.4
1,021,021 + -0.0
1,021,207 + SM_b21355 0.14 +0.5
1,021,274 + SM_b21355 0.21 -1.2
1,021,274 + SM_b21355 0.21 +0.4
1,021,275 - SM_b21355 0.21 +0.1
1,021,413 - SM_b21355 0.34 +0.1
1,021,543 + SM_b21355 0.47 +1.1
1,021,543 + SM_b21355 0.47 +0.3
1,021,544 - SM_b21355 0.47 +0.3
1,021,544 - SM_b21355 0.47 +0.2
1,021,611 - SM_b21355 0.54 +0.0
1,021,666 + SM_b21355 0.59 -0.0
1,021,667 - SM_b21355 0.59 +1.3
1,021,796 + SM_b21355 0.72 -0.2
1,021,797 - SM_b21355 0.72 +1.5
1,021,802 + SM_b21355 0.72 -1.2
1,021,803 - SM_b21355 0.73 -1.0
1,021,803 - SM_b21355 0.73 +0.3
1,022,105 + +1.2
1,022,105 + +0.5
1,022,106 - -0.4
1,022,125 - +0.3
1,022,335 - SM_b21356 0.16 +0.8
1,022,346 + SM_b21356 0.17 +1.1
1,022,346 + SM_b21356 0.17 -0.2
1,022,347 - SM_b21356 0.17 +0.6
1,022,347 - SM_b21356 0.17 -0.6
1,022,347 - SM_b21356 0.17 -0.2
1,022,347 - SM_b21356 0.17 -0.4
1,022,354 + SM_b21356 0.18 -0.2
1,022,355 - SM_b21356 0.18 +0.7
1,022,739 + +1.1
1,022,748 - SM_b21356 0.58 +1.0
1,022,902 + SM_b21356 0.73 +0.8
1,022,942 + SM_b21356 0.77 +0.7
1,022,943 - SM_b21356 0.77 +0.3
1,022,966 + SM_b21356 0.79 +0.1
1,022,966 + SM_b21356 0.79 -1.2
1,022,967 - SM_b21356 0.80 -0.5
1,022,967 - SM_b21356 0.80 +0.6
1,022,979 - SM_b21356 0.81 +0.1

Or see this region's nucleotide sequence