Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20901 and SM_b20902 are separated by 385 nucleotides SM_b20902 and SM_b20903 are separated by 115 nucleotides
SM_b20901: SM_b20901 - transcriptional regulator, at 1,310,089 to 1,311,300
_b20901
SM_b20902: SM_b20902 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,311,686 to 1,312,723
_b20902
SM_b20903: SM_b20903 - sugar uptake ABC transporter permease, at 1,312,839 to 1,314,200
_b20903
Position (kb)
1311
1312
1313 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1311.000 kb on - strand, within SM_b20901 at 1311.000 kb on - strand, within SM_b20901 at 1311.000 kb on - strand, within SM_b20901 at 1311.014 kb on + strand, within SM_b20901 at 1311.053 kb on + strand, within SM_b20901 at 1311.053 kb on + strand, within SM_b20901 at 1311.229 kb on - strand at 1311.229 kb on - strand at 1311.682 kb on + strand at 1311.726 kb on + strand at 1311.727 kb on - strand at 1311.727 kb on - strand at 1311.854 kb on - strand, within SM_b20902 at 1311.854 kb on - strand, within SM_b20902 at 1311.857 kb on + strand, within SM_b20902 at 1311.857 kb on + strand, within SM_b20902 at 1311.857 kb on + strand, within SM_b20902 at 1311.857 kb on + strand, within SM_b20902 at 1311.858 kb on - strand, within SM_b20902 at 1311.858 kb on - strand, within SM_b20902 at 1311.858 kb on - strand, within SM_b20902 at 1311.858 kb on - strand, within SM_b20902 at 1311.858 kb on - strand, within SM_b20902 at 1311.858 kb on - strand, within SM_b20902 at 1311.860 kb on - strand, within SM_b20902 at 1311.860 kb on - strand, within SM_b20902 at 1312.052 kb on + strand, within SM_b20902 at 1312.053 kb on - strand, within SM_b20902 at 1312.245 kb on - strand, within SM_b20902 at 1312.245 kb on - strand, within SM_b20902 at 1312.247 kb on - strand, within SM_b20902 at 1312.247 kb on - strand, within SM_b20902 at 1312.264 kb on + strand, within SM_b20902 at 1312.312 kb on + strand, within SM_b20902 at 1312.312 kb on + strand, within SM_b20902 at 1312.312 kb on + strand, within SM_b20902 at 1312.312 kb on + strand, within SM_b20902 at 1312.313 kb on - strand, within SM_b20902 at 1312.722 kb on - strand at 1312.722 kb on - strand at 1312.824 kb on + strand at 1312.824 kb on + strand at 1312.824 kb on + strand at 1312.825 kb on - strand at 1312.825 kb on - strand at 1312.825 kb on - strand at 1312.825 kb on - strand at 1313.005 kb on + strand, within SM_b20903 at 1313.006 kb on - strand, within SM_b20903 at 1313.227 kb on - strand, within SM_b20903 at 1313.227 kb on - strand, within SM_b20903 at 1313.227 kb on - strand, within SM_b20903 at 1313.570 kb on - strand, within SM_b20903 at 1313.589 kb on + strand, within SM_b20903 at 1313.589 kb on + strand, within SM_b20903 at 1313.649 kb on + strand, within SM_b20903 at 1313.650 kb on - strand, within SM_b20903 at 1313.653 kb on - strand, within SM_b20903 at 1313.653 kb on - strand, within SM_b20903 at 1313.679 kb on + strand, within SM_b20903 at 1313.680 kb on - strand, within SM_b20903
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 1,311,000 - SM_b20901 0.75 +2.1 1,311,000 - SM_b20901 0.75 +0.0 1,311,000 - SM_b20901 0.75 +0.1 1,311,014 + SM_b20901 0.76 +1.4 1,311,053 + SM_b20901 0.80 -0.7 1,311,053 + SM_b20901 0.80 +2.1 1,311,229 - -1.4 1,311,229 - +1.2 1,311,682 + -1.7 1,311,726 + -2.1 1,311,727 - -0.6 1,311,727 - -2.1 1,311,854 - SM_b20902 0.16 -1.0 1,311,854 - SM_b20902 0.16 -1.9 1,311,857 + SM_b20902 0.16 -1.8 1,311,857 + SM_b20902 0.16 -2.5 1,311,857 + SM_b20902 0.16 -1.6 1,311,857 + SM_b20902 0.16 -0.6 1,311,858 - SM_b20902 0.17 -1.5 1,311,858 - SM_b20902 0.17 -1.3 1,311,858 - SM_b20902 0.17 +0.4 1,311,858 - SM_b20902 0.17 -1.5 1,311,858 - SM_b20902 0.17 -1.3 1,311,858 - SM_b20902 0.17 -0.1 1,311,860 - SM_b20902 0.17 -3.6 1,311,860 - SM_b20902 0.17 -1.2 1,312,052 + SM_b20902 0.35 -1.0 1,312,053 - SM_b20902 0.35 -0.3 1,312,245 - SM_b20902 0.54 -1.7 1,312,245 - SM_b20902 0.54 -1.2 1,312,247 - SM_b20902 0.54 -1.6 1,312,247 - SM_b20902 0.54 -3.3 1,312,264 + SM_b20902 0.56 -1.7 1,312,312 + SM_b20902 0.60 -1.8 1,312,312 + SM_b20902 0.60 -2.0 1,312,312 + SM_b20902 0.60 -1.1 1,312,312 + SM_b20902 0.60 -1.7 1,312,313 - SM_b20902 0.60 -1.3 1,312,722 - -1.5 1,312,722 - -2.3 1,312,824 + -1.5 1,312,824 + -2.3 1,312,824 + -1.5 1,312,825 - -2.5 1,312,825 - -2.7 1,312,825 - -2.3 1,312,825 - -1.7 1,313,005 + SM_b20903 0.12 -1.3 1,313,006 - SM_b20903 0.12 -0.7 1,313,227 - SM_b20903 0.28 -0.0 1,313,227 - SM_b20903 0.28 -1.2 1,313,227 - SM_b20903 0.28 -1.4 1,313,570 - SM_b20903 0.54 -3.9 1,313,589 + SM_b20903 0.55 -1.7 1,313,589 + SM_b20903 0.55 +0.1 1,313,649 + SM_b20903 0.59 -3.0 1,313,650 - SM_b20903 0.60 -0.2 1,313,653 - SM_b20903 0.60 -1.8 1,313,653 - SM_b20903 0.60 -1.5 1,313,679 + SM_b20903 0.62 -1.2 1,313,680 - SM_b20903 0.62 -1.0
Or see this region's nucleotide sequence