Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20902

Experiment: L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20901 and SM_b20902 are separated by 385 nucleotidesSM_b20902 and SM_b20903 are separated by 115 nucleotides SM_b20901: SM_b20901 - transcriptional regulator, at 1,310,089 to 1,311,300 _b20901 SM_b20902: SM_b20902 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,311,686 to 1,312,723 _b20902 SM_b20903: SM_b20903 - sugar uptake ABC transporter permease, at 1,312,839 to 1,314,200 _b20903 Position (kb) 1311 1312 1313Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1311.000 kb on - strand, within SM_b20901at 1311.000 kb on - strand, within SM_b20901at 1311.000 kb on - strand, within SM_b20901at 1311.014 kb on + strand, within SM_b20901at 1311.053 kb on + strand, within SM_b20901at 1311.053 kb on + strand, within SM_b20901at 1311.229 kb on - strandat 1311.229 kb on - strandat 1311.682 kb on + strandat 1311.726 kb on + strandat 1311.727 kb on - strandat 1311.727 kb on - strandat 1311.854 kb on - strand, within SM_b20902at 1311.854 kb on - strand, within SM_b20902at 1311.857 kb on + strand, within SM_b20902at 1311.857 kb on + strand, within SM_b20902at 1311.857 kb on + strand, within SM_b20902at 1311.857 kb on + strand, within SM_b20902at 1311.858 kb on - strand, within SM_b20902at 1311.858 kb on - strand, within SM_b20902at 1311.858 kb on - strand, within SM_b20902at 1311.858 kb on - strand, within SM_b20902at 1311.858 kb on - strand, within SM_b20902at 1311.858 kb on - strand, within SM_b20902at 1311.860 kb on - strand, within SM_b20902at 1311.860 kb on - strand, within SM_b20902at 1312.052 kb on + strand, within SM_b20902at 1312.053 kb on - strand, within SM_b20902at 1312.245 kb on - strand, within SM_b20902at 1312.245 kb on - strand, within SM_b20902at 1312.247 kb on - strand, within SM_b20902at 1312.247 kb on - strand, within SM_b20902at 1312.264 kb on + strand, within SM_b20902at 1312.312 kb on + strand, within SM_b20902at 1312.312 kb on + strand, within SM_b20902at 1312.312 kb on + strand, within SM_b20902at 1312.312 kb on + strand, within SM_b20902at 1312.313 kb on - strand, within SM_b20902at 1312.722 kb on - strandat 1312.722 kb on - strandat 1312.824 kb on + strandat 1312.824 kb on + strandat 1312.824 kb on + strandat 1312.825 kb on - strandat 1312.825 kb on - strandat 1312.825 kb on - strandat 1312.825 kb on - strandat 1313.005 kb on + strand, within SM_b20903at 1313.006 kb on - strand, within SM_b20903at 1313.227 kb on - strand, within SM_b20903at 1313.227 kb on - strand, within SM_b20903at 1313.227 kb on - strand, within SM_b20903at 1313.570 kb on - strand, within SM_b20903at 1313.589 kb on + strand, within SM_b20903at 1313.589 kb on + strand, within SM_b20903at 1313.649 kb on + strand, within SM_b20903at 1313.650 kb on - strand, within SM_b20903at 1313.653 kb on - strand, within SM_b20903at 1313.653 kb on - strand, within SM_b20903at 1313.679 kb on + strand, within SM_b20903at 1313.680 kb on - strand, within SM_b20903

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine
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1,311,000 - SM_b20901 0.75 +2.1
1,311,000 - SM_b20901 0.75 +0.0
1,311,000 - SM_b20901 0.75 +0.1
1,311,014 + SM_b20901 0.76 +1.4
1,311,053 + SM_b20901 0.80 -0.7
1,311,053 + SM_b20901 0.80 +2.1
1,311,229 - -1.4
1,311,229 - +1.2
1,311,682 + -1.7
1,311,726 + -2.1
1,311,727 - -0.6
1,311,727 - -2.1
1,311,854 - SM_b20902 0.16 -1.0
1,311,854 - SM_b20902 0.16 -1.9
1,311,857 + SM_b20902 0.16 -1.8
1,311,857 + SM_b20902 0.16 -2.5
1,311,857 + SM_b20902 0.16 -1.6
1,311,857 + SM_b20902 0.16 -0.6
1,311,858 - SM_b20902 0.17 -1.5
1,311,858 - SM_b20902 0.17 -1.3
1,311,858 - SM_b20902 0.17 +0.4
1,311,858 - SM_b20902 0.17 -1.5
1,311,858 - SM_b20902 0.17 -1.3
1,311,858 - SM_b20902 0.17 -0.1
1,311,860 - SM_b20902 0.17 -3.6
1,311,860 - SM_b20902 0.17 -1.2
1,312,052 + SM_b20902 0.35 -1.0
1,312,053 - SM_b20902 0.35 -0.3
1,312,245 - SM_b20902 0.54 -1.7
1,312,245 - SM_b20902 0.54 -1.2
1,312,247 - SM_b20902 0.54 -1.6
1,312,247 - SM_b20902 0.54 -3.3
1,312,264 + SM_b20902 0.56 -1.7
1,312,312 + SM_b20902 0.60 -1.8
1,312,312 + SM_b20902 0.60 -2.0
1,312,312 + SM_b20902 0.60 -1.1
1,312,312 + SM_b20902 0.60 -1.7
1,312,313 - SM_b20902 0.60 -1.3
1,312,722 - -1.5
1,312,722 - -2.3
1,312,824 + -1.5
1,312,824 + -2.3
1,312,824 + -1.5
1,312,825 - -2.5
1,312,825 - -2.7
1,312,825 - -2.3
1,312,825 - -1.7
1,313,005 + SM_b20903 0.12 -1.3
1,313,006 - SM_b20903 0.12 -0.7
1,313,227 - SM_b20903 0.28 -0.0
1,313,227 - SM_b20903 0.28 -1.2
1,313,227 - SM_b20903 0.28 -1.4
1,313,570 - SM_b20903 0.54 -3.9
1,313,589 + SM_b20903 0.55 -1.7
1,313,589 + SM_b20903 0.55 +0.1
1,313,649 + SM_b20903 0.59 -3.0
1,313,650 - SM_b20903 0.60 -0.2
1,313,653 - SM_b20903 0.60 -1.8
1,313,653 - SM_b20903 0.60 -1.5
1,313,679 + SM_b20903 0.62 -1.2
1,313,680 - SM_b20903 0.62 -1.0

Or see this region's nucleotide sequence