Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20667 and SM_b20668 are separated by 142 nucleotides SM_b20668 and SM_b20669 are separated by 11 nucleotides SM_b20669 and SM_b20670 are separated by 3 nucleotides
SM_b20667: SM_b20667 - LacI family transcriptional regulator, at 1,467,800 to 1,468,804
_b20667
SM_b20668: SM_b20668 - hypothetical protein, at 1,468,947 to 1,469,852
_b20668
SM_b20669: SM_b20669 - hydroxypyruvate isomerase, at 1,469,864 to 1,470,640
_b20669
SM_b20670: SM_b20670 - hypothetical protein, at 1,470,644 to 1,471,921
_b20670
Position (kb)
1468
1469
1470 Strain fitness (log2 ratio)
-2
-1
0
1 at 1468.050 kb on + strand, within SM_b20667 at 1468.236 kb on + strand, within SM_b20667 at 1468.322 kb on + strand, within SM_b20667 at 1468.322 kb on + strand, within SM_b20667 at 1468.322 kb on + strand, within SM_b20667 at 1468.483 kb on - strand, within SM_b20667 at 1468.645 kb on - strand, within SM_b20667 at 1468.855 kb on + strand at 1469.038 kb on - strand, within SM_b20668 at 1469.224 kb on + strand, within SM_b20668 at 1469.224 kb on + strand, within SM_b20668 at 1469.225 kb on - strand, within SM_b20668 at 1469.295 kb on + strand, within SM_b20668 at 1469.296 kb on - strand, within SM_b20668 at 1469.424 kb on + strand, within SM_b20668 at 1469.558 kb on - strand, within SM_b20668 at 1469.558 kb on - strand, within SM_b20668 at 1469.558 kb on - strand, within SM_b20668 at 1469.560 kb on - strand, within SM_b20668 at 1469.635 kb on - strand, within SM_b20668 at 1469.635 kb on - strand, within SM_b20668 at 1469.635 kb on - strand, within SM_b20668 at 1469.635 kb on - strand, within SM_b20668 at 1469.691 kb on - strand, within SM_b20668 at 1469.745 kb on + strand, within SM_b20668 at 1469.745 kb on + strand, within SM_b20668 at 1469.746 kb on - strand, within SM_b20668 at 1469.746 kb on - strand, within SM_b20668 at 1469.746 kb on - strand, within SM_b20668 at 1469.843 kb on + strand at 1469.850 kb on + strand at 1470.221 kb on + strand, within SM_b20669 at 1470.395 kb on + strand, within SM_b20669 at 1470.395 kb on + strand, within SM_b20669 at 1470.445 kb on + strand, within SM_b20669 at 1470.446 kb on - strand, within SM_b20669 at 1470.446 kb on - strand, within SM_b20669 at 1470.463 kb on + strand, within SM_b20669 at 1470.464 kb on - strand, within SM_b20669 at 1470.518 kb on + strand, within SM_b20669 at 1470.519 kb on - strand, within SM_b20669 at 1470.519 kb on - strand, within SM_b20669 at 1470.519 kb on - strand, within SM_b20669 at 1470.524 kb on + strand, within SM_b20669 at 1470.524 kb on + strand, within SM_b20669 at 1470.525 kb on - strand, within SM_b20669 at 1470.555 kb on - strand, within SM_b20669 at 1470.578 kb on + strand at 1470.579 kb on - strand at 1470.678 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 1,468,050 + SM_b20667 0.25 +0.4 1,468,236 + SM_b20667 0.43 +0.8 1,468,322 + SM_b20667 0.52 -0.1 1,468,322 + SM_b20667 0.52 +0.5 1,468,322 + SM_b20667 0.52 -0.3 1,468,483 - SM_b20667 0.68 +0.4 1,468,645 - SM_b20667 0.84 -0.2 1,468,855 + +0.3 1,469,038 - SM_b20668 0.10 -0.4 1,469,224 + SM_b20668 0.31 -1.2 1,469,224 + SM_b20668 0.31 -0.2 1,469,225 - SM_b20668 0.31 +0.0 1,469,295 + SM_b20668 0.38 -1.3 1,469,296 - SM_b20668 0.39 +0.1 1,469,424 + SM_b20668 0.53 +0.4 1,469,558 - SM_b20668 0.67 -0.6 1,469,558 - SM_b20668 0.67 -1.2 1,469,558 - SM_b20668 0.67 -0.1 1,469,560 - SM_b20668 0.68 -0.2 1,469,635 - SM_b20668 0.76 +0.8 1,469,635 - SM_b20668 0.76 -0.3 1,469,635 - SM_b20668 0.76 -0.4 1,469,635 - SM_b20668 0.76 +0.0 1,469,691 - SM_b20668 0.82 -0.1 1,469,745 + SM_b20668 0.88 -0.4 1,469,745 + SM_b20668 0.88 -1.8 1,469,746 - SM_b20668 0.88 -0.2 1,469,746 - SM_b20668 0.88 +0.6 1,469,746 - SM_b20668 0.88 -0.8 1,469,843 + +0.2 1,469,850 + +0.6 1,470,221 + SM_b20669 0.46 +0.7 1,470,395 + SM_b20669 0.68 +0.6 1,470,395 + SM_b20669 0.68 -1.4 1,470,445 + SM_b20669 0.75 -1.0 1,470,446 - SM_b20669 0.75 -1.2 1,470,446 - SM_b20669 0.75 -0.1 1,470,463 + SM_b20669 0.77 -0.6 1,470,464 - SM_b20669 0.77 -2.0 1,470,518 + SM_b20669 0.84 -0.2 1,470,519 - SM_b20669 0.84 +1.4 1,470,519 - SM_b20669 0.84 -0.4 1,470,519 - SM_b20669 0.84 -0.2 1,470,524 + SM_b20669 0.85 +1.1 1,470,524 + SM_b20669 0.85 -0.1 1,470,525 - SM_b20669 0.85 +0.3 1,470,555 - SM_b20669 0.89 -0.1 1,470,578 + -0.2 1,470,579 - +0.5 1,470,678 - -0.2
Or see this region's nucleotide sequence