Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20668

Experiment: L-Histidine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20667 and SM_b20668 are separated by 142 nucleotidesSM_b20668 and SM_b20669 are separated by 11 nucleotidesSM_b20669 and SM_b20670 are separated by 3 nucleotides SM_b20667: SM_b20667 - LacI family transcriptional regulator, at 1,467,800 to 1,468,804 _b20667 SM_b20668: SM_b20668 - hypothetical protein, at 1,468,947 to 1,469,852 _b20668 SM_b20669: SM_b20669 - hydroxypyruvate isomerase, at 1,469,864 to 1,470,640 _b20669 SM_b20670: SM_b20670 - hypothetical protein, at 1,470,644 to 1,471,921 _b20670 Position (kb) 1468 1469 1470Strain fitness (log2 ratio) -2 -1 0 1at 1468.050 kb on + strand, within SM_b20667at 1468.236 kb on + strand, within SM_b20667at 1468.322 kb on + strand, within SM_b20667at 1468.322 kb on + strand, within SM_b20667at 1468.322 kb on + strand, within SM_b20667at 1468.483 kb on - strand, within SM_b20667at 1468.645 kb on - strand, within SM_b20667at 1468.855 kb on + strandat 1469.038 kb on - strand, within SM_b20668at 1469.224 kb on + strand, within SM_b20668at 1469.224 kb on + strand, within SM_b20668at 1469.225 kb on - strand, within SM_b20668at 1469.295 kb on + strand, within SM_b20668at 1469.296 kb on - strand, within SM_b20668at 1469.424 kb on + strand, within SM_b20668at 1469.558 kb on - strand, within SM_b20668at 1469.558 kb on - strand, within SM_b20668at 1469.558 kb on - strand, within SM_b20668at 1469.560 kb on - strand, within SM_b20668at 1469.635 kb on - strand, within SM_b20668at 1469.635 kb on - strand, within SM_b20668at 1469.635 kb on - strand, within SM_b20668at 1469.635 kb on - strand, within SM_b20668at 1469.691 kb on - strand, within SM_b20668at 1469.745 kb on + strand, within SM_b20668at 1469.745 kb on + strand, within SM_b20668at 1469.746 kb on - strand, within SM_b20668at 1469.746 kb on - strand, within SM_b20668at 1469.746 kb on - strand, within SM_b20668at 1469.843 kb on + strandat 1469.850 kb on + strandat 1470.221 kb on + strand, within SM_b20669at 1470.395 kb on + strand, within SM_b20669at 1470.395 kb on + strand, within SM_b20669at 1470.445 kb on + strand, within SM_b20669at 1470.446 kb on - strand, within SM_b20669at 1470.446 kb on - strand, within SM_b20669at 1470.463 kb on + strand, within SM_b20669at 1470.464 kb on - strand, within SM_b20669at 1470.518 kb on + strand, within SM_b20669at 1470.519 kb on - strand, within SM_b20669at 1470.519 kb on - strand, within SM_b20669at 1470.519 kb on - strand, within SM_b20669at 1470.524 kb on + strand, within SM_b20669at 1470.524 kb on + strand, within SM_b20669at 1470.525 kb on - strand, within SM_b20669at 1470.555 kb on - strand, within SM_b20669at 1470.578 kb on + strandat 1470.579 kb on - strandat 1470.678 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine
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1,468,050 + SM_b20667 0.25 +0.4
1,468,236 + SM_b20667 0.43 +0.8
1,468,322 + SM_b20667 0.52 -0.1
1,468,322 + SM_b20667 0.52 +0.5
1,468,322 + SM_b20667 0.52 -0.3
1,468,483 - SM_b20667 0.68 +0.4
1,468,645 - SM_b20667 0.84 -0.2
1,468,855 + +0.3
1,469,038 - SM_b20668 0.10 -0.4
1,469,224 + SM_b20668 0.31 -1.2
1,469,224 + SM_b20668 0.31 -0.2
1,469,225 - SM_b20668 0.31 +0.0
1,469,295 + SM_b20668 0.38 -1.3
1,469,296 - SM_b20668 0.39 +0.1
1,469,424 + SM_b20668 0.53 +0.4
1,469,558 - SM_b20668 0.67 -0.6
1,469,558 - SM_b20668 0.67 -1.2
1,469,558 - SM_b20668 0.67 -0.1
1,469,560 - SM_b20668 0.68 -0.2
1,469,635 - SM_b20668 0.76 +0.8
1,469,635 - SM_b20668 0.76 -0.3
1,469,635 - SM_b20668 0.76 -0.4
1,469,635 - SM_b20668 0.76 +0.0
1,469,691 - SM_b20668 0.82 -0.1
1,469,745 + SM_b20668 0.88 -0.4
1,469,745 + SM_b20668 0.88 -1.8
1,469,746 - SM_b20668 0.88 -0.2
1,469,746 - SM_b20668 0.88 +0.6
1,469,746 - SM_b20668 0.88 -0.8
1,469,843 + +0.2
1,469,850 + +0.6
1,470,221 + SM_b20669 0.46 +0.7
1,470,395 + SM_b20669 0.68 +0.6
1,470,395 + SM_b20669 0.68 -1.4
1,470,445 + SM_b20669 0.75 -1.0
1,470,446 - SM_b20669 0.75 -1.2
1,470,446 - SM_b20669 0.75 -0.1
1,470,463 + SM_b20669 0.77 -0.6
1,470,464 - SM_b20669 0.77 -2.0
1,470,518 + SM_b20669 0.84 -0.2
1,470,519 - SM_b20669 0.84 +1.4
1,470,519 - SM_b20669 0.84 -0.4
1,470,519 - SM_b20669 0.84 -0.2
1,470,524 + SM_b20669 0.85 +1.1
1,470,524 + SM_b20669 0.85 -0.1
1,470,525 - SM_b20669 0.85 +0.3
1,470,555 - SM_b20669 0.89 -0.1
1,470,578 + -0.2
1,470,579 - +0.5
1,470,678 - -0.2

Or see this region's nucleotide sequence