Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20356 and SM_b20357 are separated by 24 nucleotides SM_b20357 and SM_b20358 are separated by 8 nucleotides
SM_b20356: SM_b20356 - sensory histidine kinase, at 364,660 to 367,413
_b20356
SM_b20357: SM_b20357 - histidine kinase, at 367,438 to 367,803
_b20357
SM_b20358: SM_b20358 - regulatory protein, at 367,812 to 369,374
_b20358
Position (kb) 367
368 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 366.503 kb on + strand, within SM_b20356 at 366.503 kb on + strand, within SM_b20356 at 366.504 kb on - strand, within SM_b20356 at 366.533 kb on + strand at 366.533 kb on + strand, within SM_b20356 at 366.534 kb on - strand, within SM_b20356 at 366.875 kb on + strand, within SM_b20356 at 366.876 kb on - strand, within SM_b20356 at 366.876 kb on - strand, within SM_b20356 at 366.975 kb on + strand at 366.976 kb on - strand, within SM_b20356 at 367.094 kb on + strand, within SM_b20356 at 367.095 kb on - strand, within SM_b20356 at 367.417 kb on + strand at 367.593 kb on + strand, within SM_b20357 at 367.593 kb on + strand, within SM_b20357 at 367.593 kb on + strand, within SM_b20357 at 367.664 kb on + strand, within SM_b20357 at 367.800 kb on - strand at 367.802 kb on - strand at 367.802 kb on - strand at 367.802 kb on - strand at 367.802 kb on - strand at 367.946 kb on + strand at 367.946 kb on + strand at 367.946 kb on + strand at 367.946 kb on + strand at 367.947 kb on - strand at 367.947 kb on - strand at 367.947 kb on - strand at 367.948 kb on + strand at 368.104 kb on + strand at 368.104 kb on + strand, within SM_b20358 at 368.104 kb on + strand, within SM_b20358 at 368.104 kb on + strand, within SM_b20358 at 368.104 kb on + strand, within SM_b20358 at 368.104 kb on + strand, within SM_b20358 at 368.105 kb on - strand, within SM_b20358 at 368.105 kb on - strand, within SM_b20358 at 368.105 kb on - strand, within SM_b20358 at 368.105 kb on - strand, within SM_b20358 at 368.105 kb on - strand, within SM_b20358 at 368.105 kb on - strand, within SM_b20358 at 368.105 kb on - strand, within SM_b20358 at 368.105 kb on - strand, within SM_b20358 at 368.105 kb on - strand, within SM_b20358 at 368.158 kb on + strand, within SM_b20358 at 368.612 kb on - strand, within SM_b20358 at 368.644 kb on - strand, within SM_b20358 at 368.747 kb on - strand, within SM_b20358
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 366,503 + SM_b20356 0.67 -2.8 366,503 + SM_b20356 0.67 -1.7 366,504 - SM_b20356 0.67 +1.0 366,533 + -0.4 366,533 + SM_b20356 0.68 -1.2 366,534 - SM_b20356 0.68 +0.6 366,875 + SM_b20356 0.80 -0.2 366,876 - SM_b20356 0.80 -0.1 366,876 - SM_b20356 0.80 -0.2 366,975 + -1.4 366,976 - SM_b20356 0.84 +0.1 367,094 + SM_b20356 0.88 +0.3 367,095 - SM_b20356 0.88 +0.5 367,417 + -0.7 367,593 + SM_b20357 0.42 -0.7 367,593 + SM_b20357 0.42 -0.1 367,593 + SM_b20357 0.42 -0.6 367,664 + SM_b20357 0.62 -3.0 367,800 - +0.1 367,802 - -0.2 367,802 - +0.5 367,802 - -0.5 367,802 - -0.4 367,946 + -0.3 367,946 + -0.6 367,946 + +3.2 367,946 + -0.1 367,947 - -0.1 367,947 - +0.1 367,947 - -0.1 367,948 + -0.9 368,104 + +0.5 368,104 + SM_b20358 0.19 -0.1 368,104 + SM_b20358 0.19 -0.2 368,104 + SM_b20358 0.19 -0.5 368,104 + SM_b20358 0.19 -0.5 368,104 + SM_b20358 0.19 -0.4 368,105 - SM_b20358 0.19 +0.6 368,105 - SM_b20358 0.19 +0.7 368,105 - SM_b20358 0.19 +1.1 368,105 - SM_b20358 0.19 -0.9 368,105 - SM_b20358 0.19 -0.9 368,105 - SM_b20358 0.19 +0.2 368,105 - SM_b20358 0.19 -0.1 368,105 - SM_b20358 0.19 -0.8 368,105 - SM_b20358 0.19 -0.7 368,158 + SM_b20358 0.22 -0.2 368,612 - SM_b20358 0.51 +0.3 368,644 - SM_b20358 0.53 +1.1 368,747 - SM_b20358 0.60 +0.9
Or see this region's nucleotide sequence