Experiment: L-Histidine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20318 and SM_b20319 are separated by 50 nucleotides SM_b20319 and SM_b20320 are separated by 140 nucleotides
SM_b20318: SM_b20318 - sugar ABC transporter permease, at 320,500 to 321,531
_b20318
SM_b20319: SM_b20319 - hypothetical protein, at 321,582 to 322,799
_b20319
SM_b20320: SM_b20320 - TRAP-type large permease component, at 322,940 to 323,935
_b20320
Position (kb) 321
322
323 Strain fitness (log2 ratio) -1
0
1 at 320.595 kb on + strand at 320.595 kb on + strand at 320.596 kb on - strand at 320.753 kb on + strand, within SM_b20318 at 320.753 kb on + strand, within SM_b20318 at 320.753 kb on + strand, within SM_b20318 at 320.753 kb on + strand, within SM_b20318 at 320.785 kb on + strand, within SM_b20318 at 320.786 kb on - strand, within SM_b20318 at 320.786 kb on - strand, within SM_b20318 at 320.786 kb on - strand, within SM_b20318 at 320.812 kb on + strand, within SM_b20318 at 320.813 kb on - strand, within SM_b20318 at 320.813 kb on - strand, within SM_b20318 at 320.873 kb on + strand, within SM_b20318 at 321.083 kb on - strand, within SM_b20318 at 321.121 kb on + strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.122 kb on - strand, within SM_b20318 at 321.123 kb on + strand, within SM_b20318 at 321.123 kb on + strand, within SM_b20318 at 321.123 kb on + strand at 321.154 kb on - strand, within SM_b20318 at 321.158 kb on - strand, within SM_b20318 at 321.235 kb on + strand, within SM_b20318 at 321.264 kb on + strand, within SM_b20318 at 321.265 kb on - strand, within SM_b20318 at 321.594 kb on - strand at 321.661 kb on + strand at 321.731 kb on + strand, within SM_b20319 at 321.733 kb on + strand, within SM_b20319 at 322.371 kb on + strand, within SM_b20319 at 322.372 kb on - strand, within SM_b20319 at 322.372 kb on - strand, within SM_b20319 at 322.376 kb on - strand, within SM_b20319 at 322.479 kb on - strand, within SM_b20319 at 322.479 kb on - strand, within SM_b20319 at 322.479 kb on - strand, within SM_b20319 at 322.563 kb on - strand, within SM_b20319 at 322.627 kb on + strand, within SM_b20319 at 322.645 kb on - strand, within SM_b20319 at 322.698 kb on - strand at 323.008 kb on - strand at 323.008 kb on - strand at 323.379 kb on + strand, within SM_b20320 at 323.405 kb on - strand, within SM_b20320
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine remove 320,595 + -0.5 320,595 + -0.3 320,596 - +0.2 320,753 + SM_b20318 0.25 +0.5 320,753 + SM_b20318 0.25 -1.6 320,753 + SM_b20318 0.25 -0.3 320,753 + SM_b20318 0.25 +0.2 320,785 + SM_b20318 0.28 -0.4 320,786 - SM_b20318 0.28 -0.2 320,786 - SM_b20318 0.28 +1.2 320,786 - SM_b20318 0.28 +0.9 320,812 + SM_b20318 0.30 -1.2 320,813 - SM_b20318 0.30 -1.2 320,813 - SM_b20318 0.30 -0.3 320,873 + SM_b20318 0.36 -0.1 321,083 - SM_b20318 0.56 -0.4 321,121 + SM_b20318 0.60 -0.4 321,122 - SM_b20318 0.60 +0.6 321,122 - SM_b20318 0.60 +0.0 321,122 - SM_b20318 0.60 -0.1 321,122 - SM_b20318 0.60 +0.6 321,123 + SM_b20318 0.60 -0.6 321,123 + SM_b20318 0.60 +0.6 321,123 + +0.5 321,154 - SM_b20318 0.63 +0.6 321,158 - SM_b20318 0.64 -1.5 321,235 + SM_b20318 0.71 +0.4 321,264 + SM_b20318 0.74 +0.0 321,265 - SM_b20318 0.74 +0.1 321,594 - -0.1 321,661 + +0.0 321,731 + SM_b20319 0.12 +0.9 321,733 + SM_b20319 0.12 -0.6 322,371 + SM_b20319 0.65 -0.7 322,372 - SM_b20319 0.65 -0.1 322,372 - SM_b20319 0.65 -0.3 322,376 - SM_b20319 0.65 -0.3 322,479 - SM_b20319 0.74 -0.1 322,479 - SM_b20319 0.74 -1.7 322,479 - SM_b20319 0.74 +0.4 322,563 - SM_b20319 0.81 -1.1 322,627 + SM_b20319 0.86 -1.1 322,645 - SM_b20319 0.87 -0.6 322,698 - +0.7 323,008 - -0.0 323,008 - -0.9 323,379 + SM_b20320 0.44 +0.9 323,405 - SM_b20320 0.47 +0.6
Or see this region's nucleotide sequence