Experiment: epiphytic; Lima bean
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4852 and Psyr_4853 are separated by 348 nucleotides Psyr_4853 and Psyr_4854 are separated by 138 nucleotides Psyr_4854 and Psyr_4855 are separated by 75 nucleotides Psyr_4855 and Psyr_4856 are separated by 51 nucleotides
Psyr_4852: Psyr_4852 - D-3-phosphoglycerate dehydrogenase, at 5,759,127 to 5,760,356
_4852
Psyr_4853: Psyr_4853 - conserved hypothetical protein, at 5,760,705 to 5,761,142
_4853
Psyr_4854: Psyr_4854 - 2OG-Fe(II) oxygenase superfamily, at 5,761,281 to 5,761,982
_4854
Psyr_4855: Psyr_4855 - conserved hypothetical protein, at 5,762,058 to 5,762,816
_4855
Psyr_4856: Psyr_4856 - conserved hypothetical protein, at 5,762,868 to 5,763,059
_4856
Position (kb) 5761
5762 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5760.410 kb on + strand at 5760.513 kb on + strand at 5760.513 kb on + strand at 5760.706 kb on + strand at 5760.707 kb on - strand at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.030 kb on + strand, within Psyr_4853 at 5761.031 kb on - strand, within Psyr_4853 at 5761.031 kb on - strand, within Psyr_4853 at 5761.031 kb on - strand, within Psyr_4853 at 5761.031 kb on - strand, within Psyr_4853 at 5761.031 kb on - strand, within Psyr_4853 at 5761.065 kb on + strand, within Psyr_4853 at 5761.065 kb on + strand, within Psyr_4853 at 5761.065 kb on + strand, within Psyr_4853 at 5761.065 kb on + strand, within Psyr_4853 at 5761.066 kb on - strand, within Psyr_4853 at 5761.066 kb on - strand, within Psyr_4853 at 5761.066 kb on - strand, within Psyr_4853 at 5761.066 kb on - strand, within Psyr_4853 at 5761.066 kb on - strand, within Psyr_4853 at 5761.166 kb on + strand at 5761.167 kb on - strand at 5761.167 kb on - strand at 5761.167 kb on - strand at 5761.214 kb on + strand at 5761.215 kb on - strand at 5761.417 kb on + strand, within Psyr_4854 at 5761.438 kb on + strand, within Psyr_4854 at 5761.438 kb on + strand, within Psyr_4854 at 5761.438 kb on + strand, within Psyr_4854 at 5761.438 kb on + strand, within Psyr_4854 at 5761.438 kb on + strand, within Psyr_4854 at 5761.438 kb on + strand, within Psyr_4854 at 5761.438 kb on + strand, within Psyr_4854 at 5761.438 kb on + strand, within Psyr_4854 at 5761.438 kb on + strand, within Psyr_4854 at 5761.439 kb on - strand, within Psyr_4854 at 5761.439 kb on - strand, within Psyr_4854 at 5761.439 kb on - strand, within Psyr_4854 at 5761.439 kb on - strand, within Psyr_4854 at 5761.439 kb on - strand, within Psyr_4854 at 5761.439 kb on - strand, within Psyr_4854 at 5761.439 kb on - strand, within Psyr_4854 at 5761.439 kb on - strand, within Psyr_4854 at 5761.486 kb on + strand, within Psyr_4854 at 5761.487 kb on - strand, within Psyr_4854 at 5761.487 kb on - strand, within Psyr_4854 at 5761.546 kb on + strand, within Psyr_4854 at 5761.719 kb on + strand, within Psyr_4854 at 5761.720 kb on - strand, within Psyr_4854 at 5761.829 kb on + strand, within Psyr_4854 at 5761.900 kb on - strand, within Psyr_4854 at 5761.916 kb on + strand at 5761.916 kb on + strand at 5761.916 kb on + strand at 5761.916 kb on + strand at 5761.916 kb on + strand at 5761.916 kb on + strand at 5761.916 kb on + strand at 5761.917 kb on - strand at 5761.917 kb on - strand at 5761.917 kb on - strand at 5761.917 kb on - strand at 5761.917 kb on - strand at 5761.917 kb on - strand at 5761.917 kb on - strand at 5761.917 kb on - strand at 5761.919 kb on + strand at 5761.919 kb on + strand at 5761.920 kb on - strand at 5761.925 kb on + strand at 5761.926 kb on - strand at 5761.950 kb on + strand at 5761.950 kb on + strand at 5761.950 kb on + strand at 5761.951 kb on - strand at 5761.952 kb on + strand at 5761.952 kb on + strand at 5761.952 kb on + strand at 5761.952 kb on + strand at 5761.952 kb on + strand at 5761.952 kb on + strand at 5761.952 kb on + strand at 5761.953 kb on - strand at 5761.953 kb on - strand at 5761.953 kb on - strand at 5761.953 kb on - strand at 5761.953 kb on - strand at 5761.953 kb on - strand at 5761.953 kb on - strand at 5761.953 kb on - strand at 5761.999 kb on + strand at 5761.999 kb on + strand at 5761.999 kb on + strand at 5761.999 kb on + strand at 5762.000 kb on - strand at 5762.000 kb on - strand at 5762.118 kb on + strand at 5762.118 kb on + strand at 5762.118 kb on + strand at 5762.118 kb on + strand at 5762.118 kb on + strand at 5762.130 kb on + strand at 5762.130 kb on + strand at 5762.130 kb on + strand at 5762.130 kb on + strand at 5762.131 kb on - strand at 5762.131 kb on - strand at 5762.131 kb on - strand at 5762.131 kb on - strand at 5762.131 kb on - strand at 5762.131 kb on - strand at 5762.131 kb on - strand at 5762.200 kb on - strand, within Psyr_4855 at 5762.226 kb on + strand, within Psyr_4855 at 5762.661 kb on + strand, within Psyr_4855 at 5762.661 kb on + strand, within Psyr_4855 at 5762.661 kb on + strand, within Psyr_4855 at 5762.661 kb on + strand, within Psyr_4855 at 5762.661 kb on + strand, within Psyr_4855 at 5762.661 kb on + strand, within Psyr_4855 at 5762.661 kb on + strand, within Psyr_4855 at 5762.661 kb on + strand, within Psyr_4855 at 5762.661 kb on + strand, within Psyr_4855 at 5762.662 kb on - strand, within Psyr_4855 at 5762.662 kb on - strand, within Psyr_4855 at 5762.662 kb on - strand, within Psyr_4855 at 5762.662 kb on - strand, within Psyr_4855 at 5762.662 kb on - strand, within Psyr_4855 at 5762.736 kb on + strand, within Psyr_4855 at 5762.736 kb on + strand, within Psyr_4855 at 5762.740 kb on - strand, within Psyr_4855 at 5762.815 kb on - strand at 5762.815 kb on - strand at 5762.867 kb on + strand at 5762.867 kb on + strand at 5762.867 kb on + strand at 5762.867 kb on + strand at 5762.867 kb on + strand at 5762.868 kb on - strand at 5762.905 kb on + strand, within Psyr_4856 at 5762.905 kb on + strand, within Psyr_4856 at 5762.905 kb on + strand, within Psyr_4856 at 5762.906 kb on - strand, within Psyr_4856 at 5762.906 kb on - strand, within Psyr_4856 at 5762.906 kb on - strand, within Psyr_4856
Per-strain Table
Position Strand Gene LocusTag Fraction epiphytic; Lima bean remove 5,760,410 + +0.2 5,760,513 + -0.1 5,760,513 + -0.3 5,760,706 + -2.0 5,760,707 - +0.5 5,761,030 + Psyr_4853 0.74 +0.9 5,761,030 + Psyr_4853 0.74 -2.7 5,761,030 + Psyr_4853 0.74 +1.0 5,761,030 + Psyr_4853 0.74 +0.4 5,761,030 + Psyr_4853 0.74 +1.8 5,761,030 + Psyr_4853 0.74 -2.6 5,761,030 + Psyr_4853 0.74 +0.2 5,761,030 + Psyr_4853 0.74 -3.0 5,761,030 + Psyr_4853 0.74 -1.8 5,761,030 + Psyr_4853 0.74 -2.3 5,761,030 + Psyr_4853 0.74 +2.4 5,761,030 + Psyr_4853 0.74 -0.5 5,761,030 + Psyr_4853 0.74 +1.4 5,761,031 - Psyr_4853 0.74 -2.4 5,761,031 - Psyr_4853 0.74 -0.4 5,761,031 - Psyr_4853 0.74 -0.6 5,761,031 - Psyr_4853 0.74 +1.4 5,761,031 - Psyr_4853 0.74 +1.5 5,761,065 + Psyr_4853 0.82 -0.1 5,761,065 + Psyr_4853 0.82 +0.4 5,761,065 + Psyr_4853 0.82 +2.7 5,761,065 + Psyr_4853 0.82 +2.2 5,761,066 - Psyr_4853 0.82 -0.5 5,761,066 - Psyr_4853 0.82 -0.9 5,761,066 - Psyr_4853 0.82 +1.4 5,761,066 - Psyr_4853 0.82 -0.0 5,761,066 - Psyr_4853 0.82 -1.8 5,761,166 + -0.2 5,761,167 - +0.2 5,761,167 - -0.1 5,761,167 - +0.4 5,761,214 + -0.3 5,761,215 - -3.1 5,761,417 + Psyr_4854 0.19 -2.3 5,761,438 + Psyr_4854 0.22 +0.5 5,761,438 + Psyr_4854 0.22 -2.4 5,761,438 + Psyr_4854 0.22 +0.6 5,761,438 + Psyr_4854 0.22 +0.1 5,761,438 + Psyr_4854 0.22 +1.3 5,761,438 + Psyr_4854 0.22 -1.7 5,761,438 + Psyr_4854 0.22 -2.7 5,761,438 + Psyr_4854 0.22 +0.2 5,761,438 + Psyr_4854 0.22 -0.5 5,761,439 - Psyr_4854 0.23 -1.0 5,761,439 - Psyr_4854 0.23 +0.5 5,761,439 - Psyr_4854 0.23 +0.8 5,761,439 - Psyr_4854 0.23 +0.6 5,761,439 - Psyr_4854 0.23 +0.8 5,761,439 - Psyr_4854 0.23 +0.2 5,761,439 - Psyr_4854 0.23 +0.3 5,761,439 - Psyr_4854 0.23 +2.2 5,761,486 + Psyr_4854 0.29 +0.0 5,761,487 - Psyr_4854 0.29 -0.3 5,761,487 - Psyr_4854 0.29 -0.2 5,761,546 + Psyr_4854 0.38 +0.0 5,761,719 + Psyr_4854 0.62 -3.6 5,761,720 - Psyr_4854 0.63 +0.3 5,761,829 + Psyr_4854 0.78 -1.3 5,761,900 - Psyr_4854 0.88 -0.3 5,761,916 + -1.2 5,761,916 + +0.7 5,761,916 + -0.2 5,761,916 + +0.8 5,761,916 + +0.5 5,761,916 + -2.8 5,761,916 + +0.9 5,761,917 - -1.4 5,761,917 - +1.1 5,761,917 - +1.4 5,761,917 - +0.2 5,761,917 - -0.9 5,761,917 - +0.5 5,761,917 - -2.4 5,761,917 - -0.2 5,761,919 + +1.6 5,761,919 + +1.1 5,761,920 - -1.1 5,761,925 + -0.6 5,761,926 - +1.3 5,761,950 + +0.9 5,761,950 + +1.0 5,761,950 + +2.4 5,761,951 - -3.7 5,761,952 + +1.2 5,761,952 + -1.3 5,761,952 + +1.7 5,761,952 + -0.2 5,761,952 + +1.1 5,761,952 + +0.3 5,761,952 + -0.3 5,761,953 - -1.9 5,761,953 - -1.7 5,761,953 - +0.1 5,761,953 - -0.6 5,761,953 - +3.4 5,761,953 - +2.5 5,761,953 - +2.0 5,761,953 - +0.8 5,761,999 + -2.2 5,761,999 + -1.1 5,761,999 + -0.0 5,761,999 + +1.5 5,762,000 - +0.8 5,762,000 - -1.9 5,762,118 + -0.9 5,762,118 + -0.2 5,762,118 + +0.1 5,762,118 + +1.5 5,762,118 + -0.2 5,762,130 + -3.1 5,762,130 + -1.6 5,762,130 + -1.8 5,762,130 + -2.4 5,762,131 - -0.1 5,762,131 - -1.1 5,762,131 - +2.0 5,762,131 - +1.3 5,762,131 - -1.6 5,762,131 - -3.4 5,762,131 - +0.1 5,762,200 - Psyr_4855 0.19 -1.1 5,762,226 + Psyr_4855 0.22 +0.3 5,762,661 + Psyr_4855 0.79 +1.4 5,762,661 + Psyr_4855 0.79 +2.0 5,762,661 + Psyr_4855 0.79 -0.7 5,762,661 + Psyr_4855 0.79 +1.1 5,762,661 + Psyr_4855 0.79 +1.4 5,762,661 + Psyr_4855 0.79 +3.0 5,762,661 + Psyr_4855 0.79 -1.6 5,762,661 + Psyr_4855 0.79 -0.7 5,762,661 + Psyr_4855 0.79 -0.0 5,762,662 - Psyr_4855 0.80 -1.6 5,762,662 - Psyr_4855 0.80 +0.6 5,762,662 - Psyr_4855 0.80 -2.2 5,762,662 - Psyr_4855 0.80 -2.1 5,762,662 - Psyr_4855 0.80 +1.2 5,762,736 + Psyr_4855 0.89 +0.4 5,762,736 + Psyr_4855 0.89 -0.5 5,762,740 - Psyr_4855 0.90 -1.4 5,762,815 - -0.1 5,762,815 - +0.8 5,762,867 + -2.6 5,762,867 + -0.5 5,762,867 + +0.3 5,762,867 + +1.0 5,762,867 + +0.5 5,762,868 - +0.4 5,762,905 + Psyr_4856 0.19 -0.4 5,762,905 + Psyr_4856 0.19 -1.3 5,762,905 + Psyr_4856 0.19 +0.2 5,762,906 - Psyr_4856 0.20 -0.3 5,762,906 - Psyr_4856 0.20 -0.9 5,762,906 - Psyr_4856 0.20 -3.2
Or see this region's nucleotide sequence